Pfla020917.2
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292448.1:3995013-4005450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.3 5.1e+02 1.8 0.2 2 16 39 53 38 55 0.85 2 13 0.089 5.5 8.0 2.6 1 23 257 280 257 280 0.96 3 13 0.00071 0.044 14.6 0.3 1 23 287 309 287 309 0.98 4 13 4.1 2.5e+02 2.8 0.2 1 19 313 331 313 336 0.85 5 13 1.2 72 4.5 0.2 1 17 341 357 341 358 0.88 6 13 0.13 7.8 7.5 2.3 1 23 372 395 372 395 0.94 7 13 5.3e-06 0.00033 21.3 0.9 2 23 400 422 399 422 0.95 8 13 7.3 4.5e+02 2.0 0.2 3 23 430 447 428 447 0.62 9 13 0.001 0.062 14.2 0.4 3 21 456 474 455 479 0.93 10 13 0.0011 0.07 14.0 1.0 1 23 488 511 488 511 0.96 11 13 0.068 4.1 8.4 4.3 1 23 517 540 517 540 0.95 12 13 6.7e-06 0.00041 21.0 1.2 3 23 551 571 550 571 0.98 13 13 6.2e-07 3.8e-05 24.3 0.2 1 23 577 600 577 600 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAATATGCTCTACGTGTCTCAGCCGAGATAGAATACTAGTGTCGTTGGATAAAGTGAAATATGTGTCGATATTTGGTAATGAATCGGTGCTTATGAGTGTGGATTCAGTATGCTGGGAGTGCTCAGCGATGTTCCGTAAACTGTACAAGTTTCGGCTGCAAGTCTTGTCTGCCCAGGAGTCATTGAAGAGTGCCTGCGATAAGATTACCAATCTCGCTCCATTAACAAATCTAAAATGCTCAAGTTTAAACCTCAACGATATATGCTGTGATCAAAACATTGATCACTCTGATCAAAAACAGTCTAAATATATGGAAGCGATGAAAACAGATCTATTAGTACAGAATATTAAATCGGAAACAtatgttgatgatgaaaatattaACCAAAATGCAAGCCCAAACAAATTTTTCATCACTATAGATGGTTTGAAATGCAATGATGCCAAAATAGCCAGCATAGAGACGTGTGTAGACGTAACAAGAATAAAAAATGAGAACGACGAAGAGAGTGACGATATAAGCGTCTCAAATTTAGAACCAGTTATATCAGTCGCTAAAAAACGAAAACTCAACCATGCTAAAAGTAAACCTAAGGGAATGAAAACGGAAAATTCGAAGCGAACGAAACAAACACAGCAGAGAGATGTGAAACTCGCAGTTTCAAAAGACAACTACATTGTAACAGAGATGACGGAAGAGGAGATGGAAGCGAAGAGAGAAGCAGATAGGCAGGCTGATAGGTACAAGAATAAAGTTAAATTCCGATGTGAATTGTGCATTTCGGGGTTTTTTCATAAGGAGCTGTTTGAAAAACACATGAGAATAAGACATTCAGAGAAAGCAGGAAAATACCAGTGTGATGTCTGCGCGACTCGCTTCAAGACCGTCAGCTTGTATAGGGAGCACCTGGAGATCCACTATCGGAAGTACCGCTGCAAACTGTGCTCCTACGTCGGGTATACGCTAACGGAAATGGTGTCGCACGACGCTAGAGAGCATGGCGTCAAACGGTTCTCTTGTAAACTATGCAAGGAGGAATTTCCCGTTTTATATACGCTAACAGAAATAGTATCACATGACGCTAGAGAGCATGGCGTCAAACGGTTTTCTTGTAAACTGTGCAAGAAGGAGTTTCCacTACGATCAAGGTTGAGATTCCACCGAGAAACGATGCACGAAGCACCGGTGAAGTGCGAGTCTTGTGGTAAAACATTTAGGACCAGAGATAGTCTCCGGATACATGTAAAACAAATGCATAGTCACAATCCGAAAACGGCGTGTCCAGTGTGCGGCGCGCGCGTTCGCAACATGAAGAGCCACTCGCGCGTGCACGAGGCGGCGCCGGAGGCCGCGTACTGTGCCGAGTGCGACAAGCGATTCACCTCCACCGCCTCCTACAAGTCACACCTCAAGTACTCAGCGCCACACCGCGCGCCGGACACTGTACTCAGCCACGAATGCCGCGTTTGTGGCTCTCGCTTCGTGAACGCGGTCGGGCTGAAGAAACACACTCTGAGACGGCACTCCAACGTACGTCCGCACAAATGCGACCGCTGCGGCAAGGGCTTCGAAGAGGGCTGTAAACTAAAACAGCATATACTTCACGCGCACGAGGGCGTCGAAAAACCTAAGGACAAGATATGCCACATCTGCGGAAGAGGATTCACTACGAAACTAACGCTGAGCAATCACATCCGCGTGCATACGGGCGAGAAACCGTTCCGCTGTGAGATCTGCGGCGCCGCCTTCAGTCAGAAGAGCTCGCTGACCACGCACACGCGCGGAGTACATCTCAAGATCAAGCCGAGACCCGGGAACCGGGGGAACAACATATAG
- Protein Sequence
- MSEICSTCLSRDRILVSLDKVKYVSIFGNESVLMSVDSVCWECSAMFRKLYKFRLQVLSAQESLKSACDKITNLAPLTNLKCSSLNLNDICCDQNIDHSDQKQSKYMEAMKTDLLVQNIKSETYVDDENINQNASPNKFFITIDGLKCNDAKIASIETCVDVTRIKNENDEESDDISVSNLEPVISVAKKRKLNHAKSKPKGMKTENSKRTKQTQQRDVKLAVSKDNYIVTEMTEEEMEAKREADRQADRYKNKVKFRCELCISGFFHKELFEKHMRIRHSEKAGKYQCDVCATRFKTVSLYREHLEIHYRKYRCKLCSYVGYTLTEMVSHDAREHGVKRFSCKLCKEEFPVLYTLTEIVSHDAREHGVKRFSCKLCKKEFPLRSRLRFHRETMHEAPVKCESCGKTFRTRDSLRIHVKQMHSHNPKTACPVCGARVRNMKSHSRVHEAAPEAAYCAECDKRFTSTASYKSHLKYSAPHRAPDTVLSHECRVCGSRFVNAVGLKKHTLRRHSNVRPHKCDRCGKGFEEGCKLKQHILHAHEGVEKPKDKICHICGRGFTTKLTLSNHIRVHTGEKPFRCEICGAAFSQKSSLTTHTRGVHLKIKPRPGNRGNNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170891;
- 90% Identity
- iTF_01170891;
- 80% Identity
- -