Pfla019691.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292446.1:199647-209094[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.5 2.2e+02 3.0 0.7 2 23 176 197 175 197 0.94 2 9 7.4e-05 0.0045 17.7 0.1 1 23 242 265 242 265 0.96 3 9 0.28 17 6.5 0.0 2 23 271 292 270 292 0.96 4 9 6.6e-06 0.0004 21.0 3.1 1 23 302 324 302 324 0.99 5 9 4.4e-06 0.00027 21.6 1.2 1 23 329 351 329 351 0.98 6 9 0.0023 0.14 13.0 1.6 1 23 360 382 360 382 0.97 7 9 3.3e-06 0.00021 22.0 1.4 1 23 388 411 388 411 0.97 8 9 0.007 0.43 11.5 4.4 1 23 417 440 417 440 0.97 9 9 0.00016 0.0099 16.7 2.6 1 23 448 471 448 471 0.96
Sequence Information
- Coding Sequence
- atgtataataacAGTGGGCCTTACGGACGCAATGAACTGTCGACTACTATGCTATCCCAAGTGACACTTTCCAATGCtctgaattttaatattttgggtAAACAGGGTCGCGTTACATCCCAAAAGAGTAACGAACAGTTCAATGTGCACAATTACTCGGAATTTGGACAAGGTCCGATGAGCTTTGAGCCTGCAACGAGTCCTTTTCCAACGCCCCAATCGGACGGTTCTATTGATAGTGGGAAAGAAACTATGCACGCGGGACTCAATTTTGTGGCTGTAGATGGTCCTATGTTCAAAATCGACTCAGACCCTTCGGAGAACCAATCAATTCAAGAAACACTAGTAGAAGTGAAACTCGAGCCAGCCAGCTGGGCAGACACGGACTACCTACAACCGTTCTGTCGAGACTCCAACGGAGTCATGAACTACGACAAGATAGATGCGCCGATTGTGTACAGCGAATCCAGTGTCGAGAAAGCCTTGGAGTGTGTTAGAAATGGTACAAAGTGGGACATGTACTTGGAGTGTCCGTCCTGCTCGCTGCTGCTGCGACACCCGAAGCGATTCCTCGTCCACTTGAAGTGGCACTCCTTCGGGCTCACGCACGCGCGCCGTCTGGACGAACTCAACGAGCAGCAGATTCTGAAAGACGAGAGGCGGAAAGCGAAGCTCCTGGAGCGGCTGAAGCTGGACGAGGCGAGCGAAGCGCCCGACGGGGACTTCCCCTGCAAGGACTGCGATAAGGTGTACGTGGCGAGGGGCGGCCTCAAGAAACATCGCGCCAGGGAGCATCCGGTCAAGATGACGAAATGCAAGGTCTGTCTCGCGCCCGTGAAGGGACTCGCCGGGTTCCGCGCTCACATGGCCACGCACACTAGCAAGGAACGGGAAACACAGAAGTACCAGTGTCCGGAGTGTCCGAAGAAATACAAATTCTCTCACTCCCTCTATAAACATATTGACACGCATTTGgAGAAGAAACATAAATGTGAGGTCTGCACGAAAATGTTCGGCTCGGAAGCGCAGCTCGCGCGGCATATGAAGTCTCACGAGAAGGTGGCGCGGGGGGCCCAGTTCCACTGTGCCTTCTGCGGGAAGGGGTACTACGACACGTTCACACTGCAAATCCACGAAAGGATTCACACGAACGAGCGTCCGTTTTCGTGTGAAATCTGCAAAACCGCTTTCCAAACCAACTCTAGCCTCAGACGACATACCAGGATTTCTCACAACTCTGACGCGGCTCACAAGTGCGGGACCTGCCAGCGTTGCTTCAACTCTGACAAGGTGTTGCAGAGACACGTGATGCGAGCGCACTCCGACCCCGACTCCTTCCAGTACCCCTGCACCATGTGCGACaggagatACTTCAAGTCCAAAGATCTGAGGAACCATATGTACAAGTCTCACGCGCGACCCGGGCGAGCTTCCCCGAGCGAGACGGAATGA
- Protein Sequence
- MYNNSGPYGRNELSTTMLSQVTLSNALNFNILGKQGRVTSQKSNEQFNVHNYSEFGQGPMSFEPATSPFPTPQSDGSIDSGKETMHAGLNFVAVDGPMFKIDSDPSENQSIQETLVEVKLEPASWADTDYLQPFCRDSNGVMNYDKIDAPIVYSESSVEKALECVRNGTKWDMYLECPSCSLLLRHPKRFLVHLKWHSFGLTHARRLDELNEQQILKDERRKAKLLERLKLDEASEAPDGDFPCKDCDKVYVARGGLKKHRAREHPVKMTKCKVCLAPVKGLAGFRAHMATHTSKERETQKYQCPECPKKYKFSHSLYKHIDTHLEKKHKCEVCTKMFGSEAQLARHMKSHEKVARGAQFHCAFCGKGYYDTFTLQIHERIHTNERPFSCEICKTAFQTNSSLRRHTRISHNSDAAHKCGTCQRCFNSDKVLQRHVMRAHSDPDSFQYPCTMCDRRYFKSKDLRNHMYKSHARPGRASPSETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170902;
- 90% Identity
- iTF_01170902;
- 80% Identity
- -