Pfla019190.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292444.1:7316541-7319726[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.27 16 6.5 0.8 1 23 254 277 254 277 0.93 2 17 0.0048 0.29 12.0 2.2 1 23 282 305 282 305 0.96 3 17 0.0049 0.3 12.0 0.5 1 23 335 358 335 358 0.97 4 17 0.058 3.6 8.6 1.0 3 23 420 441 418 441 0.92 5 17 6.5e-05 0.004 17.9 2.1 1 23 447 470 447 470 0.96 6 17 0.012 0.73 10.8 0.6 2 21 474 493 473 494 0.93 7 17 0.012 0.74 10.8 0.2 1 23 502 525 502 525 0.94 8 17 0.0038 0.24 12.3 0.2 1 23 530 553 530 553 0.95 9 17 0.002 0.12 13.2 0.2 2 23 566 587 565 587 0.95 10 17 0.00096 0.059 14.2 1.5 1 23 593 615 593 615 0.97 11 17 4.7e-06 0.00029 21.5 0.3 3 23 653 673 652 673 0.96 12 17 0.097 5.9 7.9 0.6 3 23 679 699 678 699 0.92 13 17 0.0021 0.13 13.2 0.1 2 23 717 739 716 739 0.96 14 17 0.00027 0.017 15.9 3.3 1 23 745 767 745 767 0.98 15 17 0.0013 0.078 13.8 7.3 2 23 774 795 773 795 0.96 16 17 0.059 3.6 8.6 4.1 1 23 801 824 801 825 0.95 17 17 2.5 1.5e+02 3.5 0.1 2 23 830 852 829 852 0.93
Sequence Information
- Coding Sequence
- ATGGACATGAAAATGAATAAGACTCGGAGAGAGCTCCTGAATATAGAATGGCTGAAAGCTCGCATGAGAACTATTTGGACCTTACCCCGGTATTGTGCACTTTGCCTCTCGTCTGATGCAGAGTTTTATTCGCTGAACATGGGATTCACAGGCCATGAAGAGATAAATACGAGGCCATTGAGAGAGGTGGTCAATTATGTGTTTAATTTTGATATTGAAGAGTACATGCCAAGTGACTATATTTGCGAGCAATGCACGGAAAAAACAATACAAGCATACATTCTCATCACTAACACCAAAAAAATGTTCCAAGTACTGAATAATTGTGTAAATGACATGCATTCAAAGGTCAATGATATCAACAATACCTTAATAAATGAAAGCAACACATACGAAGACTCCAACATTATGATTGTTGTTGAATATGATGAGGACACTTGCGAAAAAATCAACCAGTTAAACTCCAGTAACAATGCAATATTAACAGACAAACCATTAATATTTAAGAACAAAGATTCAGACACAACTCTTAAACATGGTAACATTTCAAAAGTTAAAGCCATTACAGATAACAAGGAAAACAAAGGACCTGTAGTCATTCCTGTGCCAAGAGTGGTCAAACATCcaagaaaaaaagaaatcaaAAGTAAAGTTACCGTCGAAGGAAAAGTGCCAACTCCGAATGTGACTTTAAAAGAAGGCAAAATTGTCATCGAACCCTTAATAACTAATGTACCATCAACTCCACGCTTTAATACCTACGCCTGCAATTCTTGCTCCGATATTTTCACAACGTACAGATCTCTGAAAGAGCATGAAAAAGCGAAACATAACCTCGTCATCTACAAATGCAGGTTTTGTGATAAAATCTACAATACACAACAGTATCTAGACATGCATTATTTATCGTCTCACGGCAGATCTCGTTGTCGATTCTGCAAGGacttattttattcagaaacaCTGAACGGTCACTTGAAAGAGAAGCATCCAAAATCTATCTACAACTGCTCAGACTGCGAATTAGTTTACTACACATACGAGAAACTTGAAATGCATGTTAAATCCAGCCATTTAGGAGTCACCGCTAGGAGCGGTCAGCAATGTGTTATGTGCCTCAAGAACTTAAAAGCGGGTGAAGTAAGCAGCCACAAATGTCAGTTTTCTTGCCTAGAATGTACAAAAGTACCTTGCGTACATTATAGCTATCTCATGTCATATAGAGAGCAGATTTTGAATCATTCACCGACTATTCGCTGCATTGACTGTGATTTCACAACGAAACGAAAGGAGCATTTAATAGGGCATGTTAACAGGGAACATTTAGACTACCACCCTTTCACATGCAATGATTGCGGAACTCAGTTTTACACGAAGCTGTCTCTTAAGACTCACATACAACAATTCCATCAGGATTTAAAATGTCAATACTGCGATATTGAATTTAAGAATGTGAAAGTTTTAAGGAACCACCAGCATGTTTGTAAATTGATTTGTCGTTCGCACGCTTGTGACAAATGTGTAGCATCCTTTGACACATCAGAAGAATTGGGGAAACATCTTGAAGTAAGCCATAGCAAGTTTGTTTACCCATGCTCGCTATGTAACAAGGAATTCCCTAAAGAGATCGCCTTAGAAGAGCACCATGCAAGAGTTCACAATGGCATACAATACAAGAAGCGAAGGAAAATCATTGAATGCACTATCTGCGATATCACATTTAAAACACTAAAAGAAATGCTCGACCATGAAAAGTTGCACTCACCAAACGAACAGTTCCCTTGCAAAGTATGCCCGAAGACCTTTTCAAATCTCAAGAAGATATATATACATAAGCAAAAACATTACTCGCACAGATTAAAGTGTCCTGGTTGTATGAAAGCTGTTGCAGCATCCTATTGCCTCCAGCATAAAGCGTTATGCCCGTATTTAAAGAAGAAGGAACTAAAGAACATATGTGACATCTGTGGAAAAGTATTCAATATGCAGTCAAGTCTGAAAACCCATCAGTTACTTCACGGCAGGCCGGAGCCTTGCGTACATTGCGGGAAACCAGTCAAACCATCCTCGATGAAGCGCCATCTCGAGCTGAAACACGCATCGTACGTTATACATGACGATAATTGCGCACCTAAGCCGCCCGTATTGAAATGCGACGATTGTGGATACATAGCTCGGAAAAAGGTAGATCTCGAGAATCACGTCAATAAAATTCATCTAAAAATCAAGCCATATAGCTGCAGCGTCTGTAGCAGGAAGTTTTGTGGCAAATCTAGATTATCCGAACACATGCGGATCCATTCGAAGAGCAACTCATGCTATTGCTCTTTTTGTGGGAAGAGATTCGCGAACAAAGTGTGTCTAAAGATGCATACTCGTAGACATACTGGTGAGAGTCCCTACGAATGCAACATATGCTTTGAGAAGTTCCGCTCTTCCAGTATTATGAAGACTCATCGGTTAAAGAAGCATCATGATAAAACCGTTTCCTGTCCATTGTGTGACGCGATGTACCATATAGTTGCGGAAATGAGATTACATGTTAGGAAAGTGCATTGGAAAAAGTCGGAACCCTTTGATTATACAAAATTAGTGTCTAAAGAACACTACCATCTGTTTGAAGATCGGAGACTGCAGAAATTGGGTGGGGAATCACTTGAGtag
- Protein Sequence
- MDMKMNKTRRELLNIEWLKARMRTIWTLPRYCALCLSSDAEFYSLNMGFTGHEEINTRPLREVVNYVFNFDIEEYMPSDYICEQCTEKTIQAYILITNTKKMFQVLNNCVNDMHSKVNDINNTLINESNTYEDSNIMIVVEYDEDTCEKINQLNSSNNAILTDKPLIFKNKDSDTTLKHGNISKVKAITDNKENKGPVVIPVPRVVKHPRKKEIKSKVTVEGKVPTPNVTLKEGKIVIEPLITNVPSTPRFNTYACNSCSDIFTTYRSLKEHEKAKHNLVIYKCRFCDKIYNTQQYLDMHYLSSHGRSRCRFCKDLFYSETLNGHLKEKHPKSIYNCSDCELVYYTYEKLEMHVKSSHLGVTARSGQQCVMCLKNLKAGEVSSHKCQFSCLECTKVPCVHYSYLMSYREQILNHSPTIRCIDCDFTTKRKEHLIGHVNREHLDYHPFTCNDCGTQFYTKLSLKTHIQQFHQDLKCQYCDIEFKNVKVLRNHQHVCKLICRSHACDKCVASFDTSEELGKHLEVSHSKFVYPCSLCNKEFPKEIALEEHHARVHNGIQYKKRRKIIECTICDITFKTLKEMLDHEKLHSPNEQFPCKVCPKTFSNLKKIYIHKQKHYSHRLKCPGCMKAVAASYCLQHKALCPYLKKKELKNICDICGKVFNMQSSLKTHQLLHGRPEPCVHCGKPVKPSSMKRHLELKHASYVIHDDNCAPKPPVLKCDDCGYIARKKVDLENHVNKIHLKIKPYSCSVCSRKFCGKSRLSEHMRIHSKSNSCYCSFCGKRFANKVCLKMHTRRHTGESPYECNICFEKFRSSSIMKTHRLKKHHDKTVSCPLCDAMYHIVAEMRLHVRKVHWKKSEPFDYTKLVSKEHYHLFEDRRLQKLGGESLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170860;
- 90% Identity
- iTF_01170860;
- 80% Identity
- -