Pfla020356.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292447.1:4860261-4876064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.066 4 8.4 1.3 1 23 241 264 241 264 0.97 2 23 0.72 44 5.2 0.3 3 23 291 311 289 311 0.96 3 23 1.8 1.1e+02 4.0 2.9 2 23 332 353 331 353 0.96 4 23 0.016 0.95 10.4 0.2 1 23 357 379 357 379 0.85 5 23 0.063 3.9 8.5 0.4 1 23 383 406 383 406 0.90 6 23 0.071 4.3 8.3 2.1 1 23 412 435 412 435 0.94 7 23 0.0067 0.41 11.6 1.6 1 23 442 465 442 465 0.95 8 23 0.061 3.7 8.6 1.2 1 23 520 543 520 543 0.95 9 23 0.81 50 5.0 0.0 2 23 567 589 566 589 0.95 10 23 0.0012 0.074 13.9 2.2 2 23 612 633 611 633 0.96 11 23 0.013 0.81 10.6 1.3 1 23 637 659 637 659 0.95 12 23 0.29 18 6.4 1.1 1 23 663 686 663 686 0.96 13 23 0.82 50 5.0 6.2 1 23 692 715 692 715 0.96 14 23 0.03 1.8 9.5 0.3 1 13 722 734 722 736 0.85 15 23 0.036 2.2 9.3 3.3 1 23 785 808 785 808 0.94 16 23 0.026 1.6 9.7 0.2 1 23 833 856 833 856 0.97 17 23 0.00031 0.019 15.8 1.4 1 23 877 899 877 899 0.98 18 23 0.0016 0.095 13.6 0.5 1 23 903 925 903 925 0.96 19 23 0.085 5.2 8.1 1.7 2 23 930 952 929 952 0.93 20 23 0.0029 0.18 12.7 0.9 2 23 957 979 956 979 0.96 21 23 0.15 9.2 7.3 4.3 1 23 985 1008 985 1008 0.93 22 23 0.002 0.12 13.2 0.2 1 23 1014 1037 1014 1037 0.96 23 23 4e-06 0.00025 21.7 3.3 1 23 1043 1065 1043 1065 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTCGCTGAAGTGACTGTGAAGGAGAGTCCCGGGCTCTGCCGCTGTTGTCTCTCCGAAGGTTGCTATAAGGATCTCGGCAGTGAATATTCATGGATGAACGAGACTGAGGTTTATGCCGATATGCTGCTAGATTGCTTTGATATTGGCATATCACAACACAACGATGGCCCTAACGGCCCTAAGCGCCTCATCTGCGAGGTGTGCATCACGCGGCTGCGGGACGCCTGCAACTTCAAGAAGCAGGTGGTGGACTCGGAGCAGAGGTTCATCGATATGCTGGGCCGTGGTGAATTCAGCCCGCCGGATAAACAGACAGTTTTCCTGCCCATCTATTCTCATGCTGCCACCATGAAGGCAGAAACTATTGAGGAGGTGACGTTGACTGAAGAGTATGATGACTCGCATGTGGAGTTCCTGGATGATGTGGATCATACCGAAGACGAAGACGCTGTCAAGTCTGAGGAAACGGTCGATCCCAGGCCGTCTACGTCAGCGGCGAAACGCGGTCGCCCCAAGAAAAGTGACAGCGAGCCGCCGGAAAAGAAACCGAAGATCAAAGCGAAAGCGAAAATTGCTAAAGATGGAAATCAAGCGGCTGAGGTGTCGCGTAAGACTTCAGTGTCGCATAACCAAAGAAATGAAATCGTAAAGACGAACGTCGCCACTATCCTACAACACTCTACTGTGATACCTTTCCGGTGGCACAGGCAATTCTACATGTGCTTCTATTGCCACCTACCCATACAGACATTCGATGCTCTCAAAGACCACATGATAACCAAACACGAAACCCCCAAAATAAAATCCGTTGTAGCGCTCATGAAAAAAGACGAAAAAGTCAAAGTTGACATCACTTCGATAGCTTGCAAGCTGTGCGAACATAAACCCAAAGACCTAGACGCTCTGATAGACCATTTAAAAACACACAATAAGCTAAATGACAACAGCGAATACGCACTCGTACCTTTCAAGCTCACAGACAAGCTCCAATGCGCGATTTGCTGCGAGAAATTCCAATACTTCATCAAACTGAACCAGCACATGAATAAGCATTACGGGAGTTACGTGTGCGAGATTTGTGGCAAGTCTTTTCTAAGCGGCGATAGACTCAGATCACATTCTTTACTCCACGTGGCCAGATTCTCTTGCAACACGTGCCCAGAAACCTTCGATACGGCCGCAAAGAGAAGCACGCACGCAACCAAAGTCCACGACAAGGCGAAATGCTTCAAATGCTACTACTGCTCTGAAACATTCCCAACCAGTTTGAAGAGGACCGATCATCTCAAAGAAACACATCGTATTGATATGCCGGTGTATGACTGTCCGGTCTGCAAAAGGAACTTTAGAAATTCTAGTAGGATGCAGTTTcatatgaaaaatgtccacatGAAGGCAACGGGTGCCACAGATCCCGAGCCCGTGGCGACCGTGGACGCATCGAAATCCCCTATCATATCCCCTATTCAGCGGAACCGCTTCATAAAGATGAACATAATAACTATTTTACAATACTCAACTGTCATCCCATTCAAATGGCAGGGGCAGTGTTACCTTTGCTTCTATTGCAACTCCCAACTAAACACCTTCGACAATCTAAAAAAACACGTTGAAACTGAacatcaaaaaacaaatatcaaatcCGTACTGATAAATAAAAGCACCACAGTCAAAATTGATGTAGCTGTAATCAGTTGTAAACTTTGTGATGTCAAACCTAAAGATCTAGACGCTCTTATAAGCCACTTGAAGATCGCACACAACAAAGTATTTCACGACGAACTTGGTTACGGAGTTATGCCTTACAAGCACATCGCGGGCAACTGTCAATGCGCAATTTGCGGCGAAACATTCCAATTCTACATCAAATTAAACCAACACATGAACAAACACTACGGCGAACACGTTTGCGAGGTCTGCGGCAAATCGTTTCTAAACACCACTCGTCTGAAAACGCACGCTCTCTCTCACGGGTCGGGGTACCCCTGCAACCGCTGTTCAGCAACCTTCAACTCTTACGCTAGGAGGAAGAACCACTACGCCACAATGCATGATATACCTAAAGATCACAAGTGCTGCTACTGCTCGGAAACGTTCCCAAACTACGGCGCTCGGACGCTTCACCACCGCTACGCTCACAACATCGATACGCCGATATTCGACTGCCCTGTCTGCGGTAAAACATTTCGCCTTAACAGTGGCAAACGCCCCGTGCCAGCAGAGTCCCTCAAGGCCCCGAGTAGGCCTCCACTATCGGCCACGAAGCGCAATCGCTTATTCAAGCGAAATGCCACAACTATCCTACAAAATAGCACGGCCGTTCCATTCAAATGGCATAGGCAGTCCTACTTATGCTTTCATTGCCACAAACCGTTCCAAGCCTTCAGCGACCTCAGAGAACACTATAATGTCGAACACGAAGAATCAAACGTCAAATCATCCGTATCATTCCTGCGAATGAACGATAAAGTCAAAATCGATATATCGACGTTTCGCTGCAAGCTTTGTGACTATGAACCGAGGAATTTAGACGCGCTAGTGAAGCATTTACGGCTCGTTCACAATAAAGTGTTCGAAGACACTGAGCTAGGAGTGataccttacaaacattttactGATTCGTACGACTGCGCGATTTGCAACGAGCGGTTCTCATACTTTATGAAGTTGAACCAGCATATGAATAAGCATTTCGGGCAGTATGTGTGCGAAAAGTGCGGCAAGACATTCCTCAGCTCCGCCAGACTCAGAATCCACACTTATATCCACAATAGCGATGTTCGCTGCCAACACTGCCCGCAGACGTTCCGATCGCTATCCATCAAGAATTCTCACATAAACAGAGTACACGAATCGAAAGTGAAATGTGCTTACTGCAACGAAACGTTCACGACGTATACTAAAAGAAAAGTGCATCTCAAGGTGGTTCATAACGTGGGCTCGTTACATGCTTGCCACGTATGCGGGAAGGAATTCTCCTGTAATAGCAGAATGGAATCACACCTGAAAGAAGTACATTATAAAGAGACTAATTTCGATTGTTCCATGTGTGAGCAAGGATTCTTCTCGAATTGGCAGCTGGCGAAACACGTAAAGGTGATACACGGTGTCGGGAAAGAGCATCAATGTGAAGTGTGTCAGAAAACTTTTGCTAAGTCGAGCACGTTGACACAACATTTAAAAACGCATGATAAATTGTCTGCGTCATGA
- Protein Sequence
- MEFAEVTVKESPGLCRCCLSEGCYKDLGSEYSWMNETEVYADMLLDCFDIGISQHNDGPNGPKRLICEVCITRLRDACNFKKQVVDSEQRFIDMLGRGEFSPPDKQTVFLPIYSHAATMKAETIEEVTLTEEYDDSHVEFLDDVDHTEDEDAVKSEETVDPRPSTSAAKRGRPKKSDSEPPEKKPKIKAKAKIAKDGNQAAEVSRKTSVSHNQRNEIVKTNVATILQHSTVIPFRWHRQFYMCFYCHLPIQTFDALKDHMITKHETPKIKSVVALMKKDEKVKVDITSIACKLCEHKPKDLDALIDHLKTHNKLNDNSEYALVPFKLTDKLQCAICCEKFQYFIKLNQHMNKHYGSYVCEICGKSFLSGDRLRSHSLLHVARFSCNTCPETFDTAAKRSTHATKVHDKAKCFKCYYCSETFPTSLKRTDHLKETHRIDMPVYDCPVCKRNFRNSSRMQFHMKNVHMKATGATDPEPVATVDASKSPIISPIQRNRFIKMNIITILQYSTVIPFKWQGQCYLCFYCNSQLNTFDNLKKHVETEHQKTNIKSVLINKSTTVKIDVAVISCKLCDVKPKDLDALISHLKIAHNKVFHDELGYGVMPYKHIAGNCQCAICGETFQFYIKLNQHMNKHYGEHVCEVCGKSFLNTTRLKTHALSHGSGYPCNRCSATFNSYARRKNHYATMHDIPKDHKCCYCSETFPNYGARTLHHRYAHNIDTPIFDCPVCGKTFRLNSGKRPVPAESLKAPSRPPLSATKRNRLFKRNATTILQNSTAVPFKWHRQSYLCFHCHKPFQAFSDLREHYNVEHEESNVKSSVSFLRMNDKVKIDISTFRCKLCDYEPRNLDALVKHLRLVHNKVFEDTELGVIPYKHFTDSYDCAICNERFSYFMKLNQHMNKHFGQYVCEKCGKTFLSSARLRIHTYIHNSDVRCQHCPQTFRSLSIKNSHINRVHESKVKCAYCNETFTTYTKRKVHLKVVHNVGSLHACHVCGKEFSCNSRMESHLKEVHYKETNFDCSMCEQGFFSNWQLAKHVKVIHGVGKEHQCEVCQKTFAKSSTLTQHLKTHDKLSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -