Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: prg
Assembly: GCA_958496245.1
Location: OY292423.1:5229628-5231439[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.24 15 6.7 0.8 2 21 177 196 176 199 0.82

2 10 0.0085 0.52 11.2 1.2 1 23 205 228 205 228 0.95

3 10 3.6e-06 0.00022 21.8 1.7 1 23 234 256 234 256 0.96

4 10 3e-07 1.8e-05 25.3 2.8 1 23 262 284 262 284 0.99

5 10 5.6e-05 0.0035 18.1 0.0 1 23 290 312 290 312 0.97

6 10 0.00011 0.007 17.1 0.9 1 23 318 340 318 340 0.98

7 10 7.9e-05 0.0048 17.6 1.0 2 23 430 452 429 452 0.95

8 10 0.00033 0.02 15.7 1.8 1 20 458 477 458 480 0.93

9 10 3.4e-06 0.00021 21.9 3.6 1 23 486 508 486 508 0.97

10 10 0.0017 0.1 13.5 0.0 3 23 517 537 515 537 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.24	15	6.7	0.8	2	21	177	196	176	199	0.82
2	10	0.0085	0.52	11.2	1.2	1	23	205	228	205	228	0.95
3	10	3.6e-06	0.00022	21.8	1.7	1	23	234	256	234	256	0.96
4	10	3e-07	1.8e-05	25.3	2.8	1	23	262	284	262	284	0.99
5	10	5.6e-05	0.0035	18.1	0.0	1	23	290	312	290	312	0.97
6	10	0.00011	0.007	17.1	0.9	1	23	318	340	318	340	0.98
7	10	7.9e-05	0.0048	17.6	1.0	2	23	430	452	429	452	0.95
8	10	0.00033	0.02	15.7	1.8	1	20	458	477	458	480	0.93
9	10	3.4e-06	0.00021	21.9	3.6	1	23	486	508	486	508	0.97
10	10	0.0017	0.1	13.5	0.0	3	23	517	537	515	537	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATCATCGCGAATTTCCACGCGCTATGTCGCCTGTGTCTGAACAAAAGCGCACTCACGGTGTCGATTTACGGGGCTGTGCCTGATGACGAAGCCAACGTATCGCTAACCTCTACAATTGCAGAATGTTGCGAACTACAGATTGATTTGAATGATGGCCTACCAGGAAAAATCTGCTACAAATGCCTGCTAAAACTAGATGAATGTTCCAAGTTTAGAACACAATGCATTCAGAATGATAATCGGCTAAGACAGATTACAAGCCGTGTGAACGATCGTGATAACTCCAACTCTTCAGAACTTAGCAATTACAACTATATTAGCCATGATCAGCTGAAACCAAAGCCGGAAGACTACATTGTTGAAGACAGTGTTGTGATGGTTGTGGATCCCAGTTTGGACTATGACTCATCAGAGGAATCCGAGGGTGTAGAACAAACCGAACCGGATGCCACTGAAAAAGATAACAACCCTGAACAGGAAACAAATACTGAGTCATTCTTCAAAAATGTCTCCATGTGTCAATATTGTGATCAAGCATTTGTTTCCCCAGAAAAATGCAAGGAACATGAGCTTGCATATCATGACCCGAACCTACCTTACAAATGTGTGGAATGCAGTTTAGTATTCGCAGAACGCTCTCAGTATGTACATCACTCTAAACAAGTACATGGCAATGATAAGCCATATAACTGCCctgagtgtgaaaaatgttttggcCGCCGCTCAGATTTGAGGAAACATTCTATTGTACATACAGGCATTAGGCCGTACCAGTGTCAGTATTGTCTGAAAAGTTTCTCTCGTAATACAAACTTGAGTAAACATCTTAGAATTCATGCAGGACACAAACCACATGTTTGCCCATTATGCCCAAGGAGTTTCGTGGCTAAAGGAGACTTGGCGCGCCATGTTCTCGTTCACTCAGGCATGAAGCCTTACCAATGTCGAAAATGCCCTCTAACTTTTGGCCGGCGAGATAAGCTCATCAAACATGAAATAAGGCATGGACCTGTTACTCCTGAACATTGTGGTTATGATAACCAAGATATGCATGATATGGTTGTGAATGTGAATCCCTACAGCAATCTCATGACATCCCCTAATCAGCATCACACAGATGGATCCAACACTGAATATGATCTTCCCCGAGTCCCAGATCATATTTCTGGTGAAAGTACCTTTGTAAGAGCACAGAAAAACCCTTCTACCTCTAAACAACAAGGCTCACCACCAAAAAAACAATCTCCTACTAAGAATAGGCCTAAGAATATAAAATGCCACCAGTGCCCAAAGAGATTCTCTTCTCTTGATGCTTACAAAACACATGTTTCTATTGCCCACATTGGGTCACGAATCTTCCAATGCAAAGTTTGTTTCAAGAAGTTTGCCCGGAAAAGGGAATTAGATCGCCATACACCCATGCACTCTGGTATGAAACCATTTTCATGTAGCCAGTGTGACAAAAAGTTCACCAGAAAAGACAAACTTAATAAACATGAGCAGAGTCATGAATGTTTGGTTGTGAATATGCCTTGCATAGAATGCGGCGCAACATTTGAGAAAAAAGCAGATTTAGTCGCCCACATCAAGTCCCATTTCACTgaaaattttgatgataaaatctcacaaataaaaaaagaagatgGACCGGACTTTCAGCTTGATGACAATTTTTATGATTTAGAAACTTAA
Protein Sequence: MEDSYIIANFHALCRLCLNKSALTVSIYGAVPDDEANVSLTSTIAECCELQIDLNDGLPGKICYKCLLKLDECSKFRTQCIQNDNRLRQITSRVNDRDNSNSSELSNYNYISHDQLKPKPEDYIVEDSVVMVVDPSLDYDSSEESEGVEQTEPDATEKDNNPEQETNTESFFKNVSMCQYCDQAFVSPEKCKEHELAYHDPNLPYKCVECSLVFAERSQYVHHSKQVHGNDKPYNCPECEKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLARHVLVHSGMKPYQCRKCPLTFGRRDKLIKHEIRHGPVTPEHCGYDNQDMHDMVVNVNPYSNLMTSPNQHHTDGSNTEYDLPRVPDHISGESTFVRAQKNPSTSKQQGSPPKKQSPTKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRIFQCKVCFKKFARKRELDRHTPMHSGMKPFSCSQCDKKFTRKDKLNKHEQSHECLVVNMPCIECGATFEKKADLVAHIKSHFTENFDDKISQIKKEDGPDFQLDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00318316;
90% Identity: iTF_01170818;
80% Identity: -