Pfla020354.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292447.1:4852372-4857030[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.005 0.3 12.0 0.9 1 23 81 104 81 104 0.93 2 20 0.0015 0.095 13.6 0.1 2 23 110 132 109 132 0.91 3 20 0.00012 0.0076 17.0 1.9 1 23 136 159 136 159 0.97 4 20 2.3e-05 0.0014 19.3 0.2 1 23 164 187 164 187 0.98 5 20 0.05 3.1 8.8 2.0 1 23 236 258 236 258 0.96 6 20 0.023 1.4 9.9 0.1 3 23 286 307 284 307 0.94 7 20 0.0012 0.076 13.9 4.2 2 23 328 350 327 350 0.95 8 20 0.0053 0.33 11.9 5.3 1 23 355 378 355 378 0.98 9 20 0.36 22 6.1 4.7 1 23 382 405 382 405 0.95 10 20 0.42 26 5.9 4.3 2 23 408 430 407 430 0.96 11 20 0.74 46 5.1 1.7 2 19 437 454 437 457 0.91 12 20 0.0019 0.11 13.3 5.6 1 23 510 533 510 533 0.97 13 20 5.9 3.6e+02 2.3 0.6 2 23 562 584 561 584 0.92 14 20 0.069 4.2 8.4 0.2 1 23 605 628 605 628 0.92 15 20 0.0022 0.14 13.1 1.7 1 23 633 656 633 656 0.94 16 20 0.00056 0.034 15.0 0.2 1 23 663 686 663 686 0.94 17 20 0.0057 0.35 11.8 0.7 2 23 692 714 691 714 0.95 18 20 0.00068 0.042 14.7 2.8 1 23 718 741 718 741 0.97 19 20 0.13 7.8 7.5 2.2 2 23 748 769 747 769 0.96 20 20 0.00094 0.058 14.3 0.4 1 23 775 797 775 797 0.94
Sequence Information
- Coding Sequence
- ATGCATTATGAAAACGAACACTCAACGCTGCAACTAGACCCGAGTGATCCGGTGCTTAAGAGATACAAACGAGGACAGACCTTTATGAGACTGAATATTGTCAATTTATCGTGCAAAATATGTCGGCTAGCATCCGGTGGTTTAGATTCTATGATCGAACATCTAGTGAACACACACGAACTCGAATACGATAGATCCTTCTCTGACGTCATAGAAACCTTTAAACTTAGCAACGATAATTACACTTGTCACATTTGCGGAGAAGTTTTTGTCTTCTTCAAAATTCTCGTTAAACATGTACGCGATAGCCACGTGGAGAGTGAAATAGTCTGCGATCTGTGCGGGAAGAGGTTCGTCAGGAACGCTACTTATTTGATGCACAAAGAATACGCCCACGGTCCAGGCTTTACCTGCAAAGAGTGCGGTAAAGACTTCTGTAGTGGCTTCAAATTGAAAGCTCACATCGCTAAAGACCACGAAGGGTTTAAGTTCAAGTGTTCTGAGTGTCCCGAGGAGTTTCCTTCTCCCTACCAAAGAAAGAAGCACATGATCACTGCTCACAATACTTCTGCGTCGTCGTTTCCGTGCCCTCACTATGTGAAACCTGAAAAAATCTTGCGATTCAGTGCCAATGAATGCAGACGGAGGAACCTTCAAACGTTGGTCAACAACACCTCCGTAATACCATTCAAATGGCGAGGCAAATATCTATGCTATTTCTGTGGCATAGATACCGAAAATTACCACGATTTGAAGGAACACACCAAAACTCACATTCCCTGCTCGATCACTGAGCGAGCAATGAAACTCATTAAATCTGGAAACGAAACTAAAATTGACGTATCAGAAATAAACTGCACTGTTTGTTCAGAACAATTTCCAAATATCGACGATTTGGTATTAcatctgaaattaaaacatgAGTTATGGTTTGATGAAGATGTATCCCTGACGCTGGTGGCTTACCGGCTTGTCGATTTGAAATGCCTAATTTGCGATGAGAGTTTCAAAATGTTCTGCAATCTGATCCGGCATATGAATCACAACCACTCTGATAATTGCTTCCAATGTGATATCTGCCACCAAAACTACAATAAGAGGCAAGATTTATATCACCACGTTAGATCTAATCACAAGAAAGACCATAGCTGTCCGAAATGTTCCCTGACGTTTTCGTGTCTACAGGATCTTTTAAAGCATAAAATGAAAGAGCATTTGTCTAGGTGCAATCTTTGCTTCCAAACATTTGCATCGCATCAGAAACGACTGAGTCACATGAAGAAAGAACATGAATTAGACGACGGAGGAGAATGTGGATTCTGTCAGAAACAGTTTCAtacaaaacaaagttttttggATCACGCTACGAAATGTAAAGTATCTCTGACGAAAGACGAAGAACCAAATGTCGTCGTCGCTGACGAAGATAATCAGGATAAGTATCGCGATGTGAGAGAACTCAGAACCAGTATTGCCTGCATCATTAACATGACTACCGCGATGCCCTTCAAGTTCTTTCATAACAAGTTTCGGTGTTTCTATTGTAGAAAAGACTTCAGCACATGCAATGATCTCAGACAACACACGACGACTGTACATCCGATATGCGAAACCACGTTTCGAGCTATGAAACTGCGCGGAAGATCTGACGGTGTTAAAATCAAAGTTGACACATCTTCTCTGCAATGTAAAATGTGCTGTATAAGATTCAACAATTTCGCCGAAGCTATCAGCCATTTGGAAATTGAACACAAGACCCTCGTGAAAAACCACATCGGTATACTACAATCATTTAAATTGGTACACGATCAGTTCGCTTGTCCATCCTGCGATGTAGAGTTTAGATATTTTGGTTTGCTATTGCAGCATTTCAATGCGAGTCACTCCGACAACCGATATATTTGCACGTTCTGTGGTAAGGGTTTCCCGACGTATCCGAATTTCCGCGGACATCTCTCTCATTACCATTCGGGTGGTAATACCACATTCAAATGCAGCGTTTGCAATCTCGGATTCCCTACGAACTTCGGCTTGAAGTTGCACATGGGTAACGCACACGGCACTAAGCTTATCAAATGCCAGCAATGCTCAGAAAAGTTCATATCCCAGTATCGTATGATGAGGCACATCCTGAACGTCCACGACGGAGGTCATAAATGCTCGTACTGCGGGATGGCGTTTATCAAATACTCCTTTATGACCAACCACGTTAGAAGGTTGCACCTTAAAGAGAAGAATGTACAGTGTACTCTGTGTAACGATAGGTTTTTTGACGCGAATCGTCTTAAGCACCACATGGTAAAACATATCGGTGAGCGCTCTTTCGCGTGCGACTATTGCGGAAAGCAGTTCTTGAGAAAGAGGAACCTAAGAGGCCATGTGGCTCTTCATCTTAAAAACGGCGCCATGATTATGTAA
- Protein Sequence
- MHYENEHSTLQLDPSDPVLKRYKRGQTFMRLNIVNLSCKICRLASGGLDSMIEHLVNTHELEYDRSFSDVIETFKLSNDNYTCHICGEVFVFFKILVKHVRDSHVESEIVCDLCGKRFVRNATYLMHKEYAHGPGFTCKECGKDFCSGFKLKAHIAKDHEGFKFKCSECPEEFPSPYQRKKHMITAHNTSASSFPCPHYVKPEKILRFSANECRRRNLQTLVNNTSVIPFKWRGKYLCYFCGIDTENYHDLKEHTKTHIPCSITERAMKLIKSGNETKIDVSEINCTVCSEQFPNIDDLVLHLKLKHELWFDEDVSLTLVAYRLVDLKCLICDESFKMFCNLIRHMNHNHSDNCFQCDICHQNYNKRQDLYHHVRSNHKKDHSCPKCSLTFSCLQDLLKHKMKEHLSRCNLCFQTFASHQKRLSHMKKEHELDDGGECGFCQKQFHTKQSFLDHATKCKVSLTKDEEPNVVVADEDNQDKYRDVRELRTSIACIINMTTAMPFKFFHNKFRCFYCRKDFSTCNDLRQHTTTVHPICETTFRAMKLRGRSDGVKIKVDTSSLQCKMCCIRFNNFAEAISHLEIEHKTLVKNHIGILQSFKLVHDQFACPSCDVEFRYFGLLLQHFNASHSDNRYICTFCGKGFPTYPNFRGHLSHYHSGGNTTFKCSVCNLGFPTNFGLKLHMGNAHGTKLIKCQQCSEKFISQYRMMRHILNVHDGGHKCSYCGMAFIKYSFMTNHVRRLHLKEKNVQCTLCNDRFFDANRLKHHMVKHIGERSFACDYCGKQFLRKRNLRGHVALHLKNGAMIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170830;
- 90% Identity
- iTF_01170830;
- 80% Identity
- -