Pfla003822.2
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292422.1:13456939-13462622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.7e-06 0.00011 22.9 1.0 2 23 154 175 153 175 0.98 2 11 1.7e-05 0.0011 19.7 4.4 2 23 183 204 182 204 0.97 3 11 0.00016 0.0098 16.7 0.6 1 23 210 232 210 232 0.97 4 11 0.013 0.81 10.6 0.1 1 17 238 254 238 255 0.93 5 11 0.11 6.4 7.8 0.1 5 23 257 275 256 275 0.94 6 11 2.3e-05 0.0014 19.4 4.0 1 23 281 303 281 303 0.96 7 11 1.2e-06 7.7e-05 23.3 0.3 1 23 309 331 309 331 0.97 8 11 3.4e-05 0.0021 18.8 1.1 3 23 339 359 338 359 0.98 9 11 4e-05 0.0024 18.6 2.9 1 23 365 387 365 387 0.98 10 11 0.0015 0.092 13.6 1.0 1 23 393 415 393 415 0.97 11 11 0.00032 0.02 15.7 5.4 1 23 421 443 421 443 0.98
Sequence Information
- Coding Sequence
- ATGGCTGAAGCTATAGATGTTCAAAAAATGTGTCGTGCATGTCTGGTGGACACGGGCCCTTTTACAAGTTTGTTTTCGCCATCCACACGAGAATCGCTGCTATTCTctgatatatttaaatattgcaCTTCTGTTGAGGTTTCAGACAGTGATGAATTACCCAAACAAATGTGTGACACCTGTGCGGATTTgctaaaaacactttacagttttaaaaaGATGGCTTTGAAGTCAAATGTTATACTGAAGCAACATTTAAACAGTCAGtcgGTGAAAATAGAGTTCCAGCAAGTAGACAGCTATAGTGTTGACGAGGCATCAGCAGACAGCAATGATGTGTGCGAGCAATCATCATCCACAAGTGACAATGAATCTGAGCTGAAAGTCGAAATGCCTGTCTCcGTAAGAAGAAGGCGAAGAAAAGGGGAACCAATGCCATTGAAAAAGAGAACCAGAATGCAATGTCCAAAATGCGATAGATCCTTCCAGAAGTATGAGAATTTTGAAGCTCACATGAGAAGTCATTTCGGGAAAAAGCCAGACATAAAGTGCGACACATGCGATAAGACATTCCGCACACTACGGAACCTACACAGTCACTCGCGCACACACACAGGCGTGCGCAAGTACCAGTGTCGGACATGCGGCAAGAGCTTCGCGTATCTGAATGTTTTGAAGACGCATGAGCTCATCCATAGCGGAGTGAAGGACCACGCGTGCCATATGTGCGACGCTAAGTTCGTACAGCGATACAATCTCAAGGGTCGGACATGCGGCAAGAGATTCGCGTATCTGAATGTTCTGAAGACGCATGAGCTCATCCATAGCGGAGTGAAGGACCACGCGTGCCATATGTGCGACGCTAAGTTCGTACAGCGATACAATCTCAAGTCACATTTACAAACGCACAACAAAGAGAAAAACTACAACTGCGCACAATGCGGTAAGAAATTCGCGCAGGCCGGTAATCTAAAGACGCACCTCATCCGACACACCGGTATCAAGAGCCAGGCCTGCACTCTCTGCGATATGCGGTTCTATATCAAGAGCGATCTCTTCAAACACATGCGATCTCATTCCAATGACAAACCTTTCTCCTGTGAATTTTGCGACAAATCGTTTAAGACGAAGAGTTTCAAAATAGTGCATTTGAGGTCACATACAGgcgAGCGTCCCTACGCATGCGACATTTGTCCGAAACGCTTCATGGCCCACAAGGACATGAGAAACCATCGTATGATCCACACAGGAGAGAAACCACACAAATGCCGGCTATGTTCCCAAGCTTTTATACAGAAATGCGCCCTGAATCGGCATATGAAGAGCCATAAAAACGACGAACCGCCTGTCTTGCAACAACCTGTGACGGCTATAGGCATCGCTTATCCAGATTGGAATGCGTGA
- Protein Sequence
- MAEAIDVQKMCRACLVDTGPFTSLFSPSTRESLLFSDIFKYCTSVEVSDSDELPKQMCDTCADLLKTLYSFKKMALKSNVILKQHLNSQSVKIEFQQVDSYSVDEASADSNDVCEQSSSTSDNESELKVEMPVSVRRRRRKGEPMPLKKRTRMQCPKCDRSFQKYENFEAHMRSHFGKKPDIKCDTCDKTFRTLRNLHSHSRTHTGVRKYQCRTCGKSFAYLNVLKTHELIHSGVKDHACHMCDAKFVQRYNLKGRTCGKRFAYLNVLKTHELIHSGVKDHACHMCDAKFVQRYNLKSHLQTHNKEKNYNCAQCGKKFAQAGNLKTHLIRHTGIKSQACTLCDMRFYIKSDLFKHMRSHSNDKPFSCEFCDKSFKTKSFKIVHLRSHTGERPYACDICPKRFMAHKDMRNHRMIHTGEKPHKCRLCSQAFIQKCALNRHMKSHKNDEPPVLQQPVTAIGIAYPDWNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267457; iTF_01183177; iTF_01170820; iTF_00686601; iTF_00737712; iTF_00662456; iTF_00361881; iTF_00661567; iTF_00856919; iTF_00638873; iTF_00632993; iTF_00377338; iTF_01528543; iTF_01529427; iTF_00119832;
- 90% Identity
- -
- 80% Identity
- -