Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292439.1:2710202-2721577[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.5 4e+02 2.2 0.4 2 14 54 66 53 70 0.79

2 10 6.4e-06 0.00039 21.1 0.3 1 19 206 224 206 226 0.95

3 10 5.5e-05 0.0034 18.1 1.4 1 23 234 256 234 256 0.98

4 10 1.7e-06 0.0001 22.9 2.1 1 23 262 284 262 284 0.98

5 10 1.3e-06 8e-05 23.3 0.9 1 23 290 312 290 312 0.98

6 10 1.9e-06 0.00012 22.7 0.1 1 23 318 340 318 340 0.96

7 10 2.6e-07 1.6e-05 25.5 1.4 1 23 346 368 346 368 0.98

8 10 1.3e-05 0.0008 20.1 1.0 1 23 374 396 374 396 0.98

9 10 0.00037 0.023 15.5 1.6 5 23 405 423 403 423 0.94

10 10 2.6e-06 0.00016 22.3 5.9 1 23 429 452 429 452 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.5	4e+02	2.2	0.4	2	14	54	66	53	70	0.79
2	10	6.4e-06	0.00039	21.1	0.3	1	19	206	224	206	226	0.95
3	10	5.5e-05	0.0034	18.1	1.4	1	23	234	256	234	256	0.98
4	10	1.7e-06	0.0001	22.9	2.1	1	23	262	284	262	284	0.98
5	10	1.3e-06	8e-05	23.3	0.9	1	23	290	312	290	312	0.98
6	10	1.9e-06	0.00012	22.7	0.1	1	23	318	340	318	340	0.96
7	10	2.6e-07	1.6e-05	25.5	1.4	1	23	346	368	346	368	0.98
8	10	1.3e-05	0.0008	20.1	1.0	1	23	374	396	374	396	0.98
9	10	0.00037	0.023	15.5	1.6	5	23	405	423	403	423	0.94
10	10	2.6e-06	0.00016	22.3	5.9	1	23	429	452	429	452	0.97

Sequence Information

Coding Sequence: ATGGACTTGCGCATAATATGTCGAATTTGCTTGGAAGCCAACAAACAATCATCCGATCTCTTCAGCAGTTATTACTTAAAAAGAAATACTTTGTATTCAGAAATGCTAACCAGCTGCACGAAACTGAAGccTAAACCAGAAGACGGCTTACCAAGACTGATCTGCAAAGAGTGTACCAAACAGCTAAAACGGACGTTTACCTTCAACCTACTGTGTGAGAAGAGTgacaaaatacttaaaaaatatctacagaacccaacaaaattacaagttactgCTAACAATGGAGAATTGTTAAAAGATGAGGATAAGGTCAAAAATGAAGTTGATTTTGAAGCTGACCACAATGTGCTTGAAATGCTGGATCAGAATGTGGTTAAGGCTATCAAAGATGATATAAAACTCGAGCCTAAATACAACGAGAGTAATGATAGCTTCTGGGATGCAGATGACAATATGCTGCTTGGAGAAATCAAACTTAACAATATAACTGAAGAAGCAGACATTGGTACACTACCGATTGAAAACTCAGAACCATTGAAAAAGAAAAGAGGAAGGAAAAAAAGAGTTTTGTATGAAGGGGAAGTCGCAGCGTTGCCTATAAGCAAATGCCCGCACCAGTGCGACGTCTGCGGGAAGGTGCTTAGTACTAAGAGTAACCTGAAGGCGCATAAAGTGTGTCACACGGATCTGCGCCCGTTTACTTGCTCTGACTGCCCCGCTACGTTTAGAGGTCACAGCGCGCTGTTTCAGCACAGAAAGGTACACACGGGGGAGACGCCCTATCACTGCGAATACTGCCCCAAACAGTTCAGCAGGCGGACCGGACTCGTCAATCATATAAGGATGCATACAGGGGAAAAACAGTTCAGCTGTGATATTTGCTTCAAGACGTTTGTGCAAAGCGCCCAGCTTTCAATTCACATGAAGCGACATAAAGGAGACAAGCCCTACTTGTGCCAGGACTGTGGGAAAGGTTTCCCGATAAAATCAGACCTGCGGGTACACCAAAGGATTCACAACGGTGAGAAGCCGTATTCCTGCCACATGTGCACTAAGACCTTCGCCACATCGGGGAACCTCTCCATACATATACGGATACATAACAAGGAAATTAGataCAACTGTAAGGAATGCCAGCGCGGATTCGTCACGAACTCCGCTTACAACGTGCACTTGAAGCGGCACAAAGGCCAGCGCGACTACCACTGCGAATGCGGAAAGACATTCTACACGTCCTCCGCGTTGAAACAACACCGGGTGGTCCACACGGGTGAGAAGAAATACCAATGCAAAATATGCGACCGGAAGTTCACTCAGACAAGTCATCTGAGAAGACATTTTAAGAGAGATCACGCGAAGCCCAACATGCCTCTGCCGTCATCGGAGCATTTTAAGGTTGTGATACGAGATGCCAAGCCTTTTGAGCTGATTGAGAATGCTATCGGCGCTTTGAATCCGGGAGTTAAATGTGAAGAATCTATAGCGTGA
Protein Sequence: MDLRIICRICLEANKQSSDLFSSYYLKRNTLYSEMLTSCTKLKPKPEDGLPRLICKECTKQLKRTFTFNLLCEKSDKILKKYLQNPTKLQVTANNGELLKDEDKVKNEVDFEADHNVLEMLDQNVVKAIKDDIKLEPKYNESNDSFWDADDNMLLGEIKLNNITEEADIGTLPIENSEPLKKKRGRKKRVLYEGEVAALPISKCPHQCDVCGKVLSTKSNLKAHKVCHTDLRPFTCSDCPATFRGHSALFQHRKVHTGETPYHCEYCPKQFSRRTGLVNHIRMHTGEKQFSCDICFKTFVQSAQLSIHMKRHKGDKPYLCQDCGKGFPIKSDLRVHQRIHNGEKPYSCHMCTKTFATSGNLSIHIRIHNKEIRYNCKECQRGFVTNSAYNVHLKRHKGQRDYHCECGKTFYTSSALKQHRVVHTGEKKYQCKICDRKFTQTSHLRRHFKRDHAKPNMPLPSSEHFKVVIRDAKPFELIENAIGALNPGVKCEESIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856901;
90% Identity: iTF_01170795;
80% Identity: -