Pfla016607.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292439.1:10711288-10713920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.045 2.8 9.0 0.4 1 23 157 180 157 180 0.93 2 10 4.4e-06 0.00027 21.6 1.0 3 23 209 229 207 229 0.97 3 10 2e-06 0.00012 22.7 4.4 2 23 244 265 244 265 0.97 4 10 2e-06 0.00012 22.6 2.3 1 23 271 293 271 293 0.98 5 10 2.5e-06 0.00015 22.4 0.8 1 23 299 321 299 321 0.99 6 10 7.8e-06 0.00048 20.8 2.4 1 23 327 349 327 349 0.99 7 10 1.3e-06 8e-05 23.2 1.2 1 23 355 377 355 377 0.98 8 10 2e-06 0.00012 22.7 0.1 1 23 383 405 383 405 0.98 9 10 5.2e-06 0.00032 21.4 0.4 1 23 411 433 411 433 0.98 10 10 0.00078 0.048 14.5 0.4 1 23 439 462 439 462 0.97
Sequence Information
- Coding Sequence
- ATGGATGCCATGGTCTGCAGAGTGTGTCTAGCCGACAATGTCAGAATGCATAACATTAGAGACATTGGACTGCAAGAAATATATGAAAGTGTCACAAATACCAAGCTGTACACTGTAGATGGGCGACCTGTAACTGTATGCTACATTTGCCGCTCGCAACTGCAGCGATGCTGGACATTCTGCCAAATGTCGCAAAGAGCTGAACAGATGTTCACAGAGCTACTTGACAATAGCACGAAGataaccCAAAAGGCAATTAGTAAACTCAACCCTAAAACAATACCTAACTTAACAGTTAAGACTACTAATACtacattatatttgtatgaacaTTCAATCAATGAAACTCCAGTAGCTGTGAAGGAAGAATATACGGAAGATAAAAAGACTACACTTGTTGATGACATTGAAATCATATCAGAAATGAAAATGGTTCAACAATTTCAAAGCCATATTAAAGAAAAGTCATTTACTTGCAAACAATGTGATAAGTTATTCTTAGAATTGGATGAATTGCGAACACATAATATGATAGTCCATACTGGAGAAGAATATAACTCAAGAACGGTAACTAAGAAAGAACCAATAACACAAAATAAGTACAGTATAGATAAGTTATTAGCTTGCAACCAATGCCGTAGAGTATTCGTTAAGACCTCTtctttacaaaaacatatgAGAATTCACTCTGAAGTAAAGCCACCTTCAACTGCTATAAAGGAGCAACCTGTCTGTCACACTTGCGGTAAAACATTTTCTACAgattttcatttaaaagttcATATGAGAATTCATAcgggagaaaagccatatgcctgtgaCAGATGCAATAAGATGTGCTCTACAAGTTCTGATTTAAAACTACACATGAGaatccacactggagaaaaacCATATACCTGTGATGTATGCTATAAGAAATTCTCTAATGGCTCTGGCTTAAAACTACACATGAGAATACACACTGGAGAGAAACCATACACCTGTGATAGATGCAATAAAACATTCTCTATAGGTCATAATTTAAAAGTACACATGAGAATTCATAcaggagaaaagccatatgcctgtgtCATGTGTAATAAAAAACTCTCTACCAGTAGCAACTTAAAAGATCACATGAAAACTCACACTGGAGTAAAGCCATATGTCTGCGTCATATGCAATAAGAATTTCTCTAGAGGTCCTGATTTAAAAGTGCACATGCGGATTCACAcgggagaaaagccatatgcctgtgtCATTTGTGACAAAAACTTCTCTAGAGGTCGTGATTTTAAAGTACACATGAGAATTCACAATGGGGAAAAGCCATTTGCCTGCAACCAGTGTCCTAGGTCGTTCTTACAATCTGATAAAATGCTAAAACATATTATGACAGCCCATACTGAAGAATGTAACACAGAAGGGGTGACCAAAAACAAACCAGTTATACAACAGCAGGACATTGAAGTAAAGTAA
- Protein Sequence
- MDAMVCRVCLADNVRMHNIRDIGLQEIYESVTNTKLYTVDGRPVTVCYICRSQLQRCWTFCQMSQRAEQMFTELLDNSTKITQKAISKLNPKTIPNLTVKTTNTTLYLYEHSINETPVAVKEEYTEDKKTTLVDDIEIISEMKMVQQFQSHIKEKSFTCKQCDKLFLELDELRTHNMIVHTGEEYNSRTVTKKEPITQNKYSIDKLLACNQCRRVFVKTSSLQKHMRIHSEVKPPSTAIKEQPVCHTCGKTFSTDFHLKVHMRIHTGEKPYACDRCNKMCSTSSDLKLHMRIHTGEKPYTCDVCYKKFSNGSGLKLHMRIHTGEKPYTCDRCNKTFSIGHNLKVHMRIHTGEKPYACVMCNKKLSTSSNLKDHMKTHTGVKPYVCVICNKNFSRGPDLKVHMRIHTGEKPYACVICDKNFSRGRDFKVHMRIHNGEKPFACNQCPRSFLQSDKMLKHIMTAHTEECNTEGVTKNKPVIQQQDIEVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -