Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292441.1:2668571-2670058[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.019 1.2 10.1 5.4 2 23 106 127 105 127 0.96

2 13 0.029 1.8 9.6 1.1 1 23 133 156 133 156 0.87

3 13 0.41 25 5.9 1.7 1 23 170 192 170 192 0.93

4 13 6.3e-05 0.0039 17.9 0.6 1 23 198 220 198 220 0.98

5 13 2.6e-05 0.0016 19.2 2.7 1 23 226 248 226 248 0.99

6 13 1.2e-05 0.00075 20.2 1.8 1 23 254 277 254 277 0.96

7 13 1.7e-05 0.001 19.8 0.3 1 23 286 308 286 308 0.97

8 13 1.6e-06 9.5e-05 23.0 2.6 1 23 314 336 314 336 0.99

9 13 3.8e-06 0.00023 21.8 2.5 1 23 342 364 342 364 0.96

10 13 0.00016 0.0098 16.7 0.2 1 23 370 392 370 392 0.96

11 13 8e-05 0.0049 17.6 1.3 3 23 399 420 397 420 0.95

12 13 8.9e-06 0.00054 20.6 0.1 1 23 425 448 425 448 0.97

13 13 7.2e-06 0.00044 20.9 1.2 1 23 454 477 454 477 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.019	1.2	10.1	5.4	2	23	106	127	105	127	0.96
2	13	0.029	1.8	9.6	1.1	1	23	133	156	133	156	0.87
3	13	0.41	25	5.9	1.7	1	23	170	192	170	192	0.93
4	13	6.3e-05	0.0039	17.9	0.6	1	23	198	220	198	220	0.98
5	13	2.6e-05	0.0016	19.2	2.7	1	23	226	248	226	248	0.99
6	13	1.2e-05	0.00075	20.2	1.8	1	23	254	277	254	277	0.96
7	13	1.7e-05	0.001	19.8	0.3	1	23	286	308	286	308	0.97
8	13	1.6e-06	9.5e-05	23.0	2.6	1	23	314	336	314	336	0.99
9	13	3.8e-06	0.00023	21.8	2.5	1	23	342	364	342	364	0.96
10	13	0.00016	0.0098	16.7	0.2	1	23	370	392	370	392	0.96
11	13	8e-05	0.0049	17.6	1.3	3	23	399	420	397	420	0.95
12	13	8.9e-06	0.00054	20.6	0.1	1	23	425	448	425	448	0.97
13	13	7.2e-06	0.00044	20.9	1.2	1	23	454	477	454	477	0.96

Sequence Information

Coding Sequence: ATGGGGAAGTTTGTGGATGAAAATTTAGTTACAGTGAAAAGTGAACCACTTGAAATTGAAGCAGAAATAGAAAAAGTTGAATTCAATAAAGACACTGTGAAAAAAGAATTTGGTACAAATGAGGAAAGGAACAATCCAATACAGACTGtgtttattcaaatcaaattggAAACAACACAAAAAGCAGATGATGACATTGTAAAAACTGAACAAGACAATAACATCAAAGATGAAAAACATGATGAACAAATTCCAGAAAACTCGCAGAAATTCCATTCCACTTCCAAAAACAATTCCAGCATTGATATATACTGCTACTGTGattactgcaataaaaaatgtttgattaaaTCAGAGTTGGAAAAACATATGAAAGTTCATGACCCTAGAAGGAATCATGTTTGCAAGTTATGTGGGTTCAGGTTCCGGCAGCTAATAGTTTTAATTCAGCATGAGTACTATTCTCATGGAATACAAGATAGTAATATAATGTCAGCTGATAAGCCATTTTCCTGCATAGTATgtaagaaaacatttttattcgaGGACAAGTTAAAGTTACACTTGAAAAATCACACAGTAGATAAACTCTACAATTGTGATGTATGTGATAAAAACTTGATGTCCAAGAAAAGTCTGGGAAGACACATGAGAATTCACAATTCTGAAAAGGCATATACCTGTAAAATATGTAACAAAACATGTGACAGCATCTCCAACATGAGAAACCATGTCAGAATTCACACCGGAGAAAAACCCTTTGCTTGCAATTTGTGTGATAAAACATACTATTCTAAATCGACCTTGAAAACGCATACTATAACAAATCATAGTCAAGATGATGAAGCCCAAAGATATGCCTGTGTATCATGTCCCAAAAAATTCcccaataaaacaaaacttgcaATACACATGAGAAGTCACACAGGAGACAAGCCGTATTCCTGCACAGAGTGTGGCAAGTCATTTGCATTGGCACACAGCCTAAAAACTCATAAGCGAActcacactggagaaaagccatttgCGTGTGACACTTGTGACAAAACTTTCAATCAAAGTAGCCAGTTGAAATTGCATAAAAGATTCCACACAGGAGAAAAGCCATATTCCTGTAAGCTGTGCGACAAAGCATTTGCTGAAATGGGGAAACTAAGAATTCATATGGTGAACCACACAGGAGAGAAGCTAGCTTGTGACAAGTGTGATTCAACCTTTACCACACAGAGCAGCAAGAAAAGGCACATGTTGAGAATCCACGGAGGAAAGCCATTCTCTTGTGAGCAATGTGATAAGTCATTTTCTGTATTACCCTCTTTGGAAAGTCACATTAAAGTGATCCACGCTGGCGAAAAGCCATTTGCCTGTAATAAATGCAATAAATCTTATTCTGAGAAAAAAGGATTGAACAAGCACATCATGAAAGTCCATGTTGATAGTAGCGATGATGAAAAGGATGAAAAGCCATTCGTTGAATTATCATCTTAA
Protein Sequence: MGKFVDENLVTVKSEPLEIEAEIEKVEFNKDTVKKEFGTNEERNNPIQTVFIQIKLETTQKADDDIVKTEQDNNIKDEKHDEQIPENSQKFHSTSKNNSSIDIYCYCDYCNKKCLIKSELEKHMKVHDPRRNHVCKLCGFRFRQLIVLIQHEYYSHGIQDSNIMSADKPFSCIVCKKTFLFEDKLKLHLKNHTVDKLYNCDVCDKNLMSKKSLGRHMRIHNSEKAYTCKICNKTCDSISNMRNHVRIHTGEKPFACNLCDKTYYSKSTLKTHTITNHSQDDEAQRYACVSCPKKFPNKTKLAIHMRSHTGDKPYSCTECGKSFALAHSLKTHKRTHTGEKPFACDTCDKTFNQSSQLKLHKRFHTGEKPYSCKLCDKAFAEMGKLRIHMVNHTGEKLACDKCDSTFTTQSSKKRHMLRIHGGKPFSCEQCDKSFSVLPSLESHIKVIHAGEKPFACNKCNKSYSEKKGLNKHIMKVHVDSSDDEKDEKPFVELSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -