Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292448.1:7744-12739[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00027 0.016 16.0 3.8 1 23 200 222 200 222 0.97

2 14 5.1e-06 0.00031 21.4 0.8 1 23 242 264 242 264 0.98

3 14 5.6e-06 0.00034 21.3 1.5 1 23 269 291 269 291 0.99

4 14 0.00019 0.012 16.4 2.1 1 23 295 319 295 319 0.95

5 14 0.00076 0.046 14.6 0.5 1 23 325 347 325 347 0.98

6 14 1.4e-05 0.00085 20.0 2.5 1 23 353 375 353 375 0.96

7 14 5.4e-07 3.3e-05 24.5 1.4 2 23 382 403 381 403 0.96

8 14 0.93 57 4.8 0.1 1 23 409 431 409 431 0.94

9 14 3.2e-05 0.002 18.9 1.0 2 23 436 457 436 457 0.97

10 14 0.0002 0.012 16.4 4.1 2 23 464 487 463 487 0.93

11 14 5.6e-06 0.00035 21.2 0.4 1 23 493 515 493 515 0.97

12 14 2.3e-06 0.00014 22.5 1.1 1 23 521 543 521 543 0.98

13 14 0.026 1.6 9.7 0.0 3 23 560 580 558 580 0.92

14 14 4.4e-06 0.00027 21.6 0.6 1 23 586 608 586 608 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00027	0.016	16.0	3.8	1	23	200	222	200	222	0.97
2	14	5.1e-06	0.00031	21.4	0.8	1	23	242	264	242	264	0.98
3	14	5.6e-06	0.00034	21.3	1.5	1	23	269	291	269	291	0.99
4	14	0.00019	0.012	16.4	2.1	1	23	295	319	295	319	0.95
5	14	0.00076	0.046	14.6	0.5	1	23	325	347	325	347	0.98
6	14	1.4e-05	0.00085	20.0	2.5	1	23	353	375	353	375	0.96
7	14	5.4e-07	3.3e-05	24.5	1.4	2	23	382	403	381	403	0.96
8	14	0.93	57	4.8	0.1	1	23	409	431	409	431	0.94
9	14	3.2e-05	0.002	18.9	1.0	2	23	436	457	436	457	0.97
10	14	0.0002	0.012	16.4	4.1	2	23	464	487	463	487	0.93
11	14	5.6e-06	0.00035	21.2	0.4	1	23	493	515	493	515	0.97
12	14	2.3e-06	0.00014	22.5	1.1	1	23	521	543	521	543	0.98
13	14	0.026	1.6	9.7	0.0	3	23	560	580	558	580	0.92
14	14	4.4e-06	0.00027	21.6	0.6	1	23	586	608	586	608	0.98

Sequence Information

Coding Sequence: ATGTCTTCGTATGTGTGTAGTGTGTGTTTGTCTGGGGACCGCAGCATCAAATTCATTGAAAATTTGGAACTTCAAGACACTTTTGAAAAACTAACAAGCTTCAAGTTGCGTGTTGCGGACGCGCTGTGCTTCGTGTGCGTCGCGCAGCTGCAGAGATGTCGTCGGTTCGCGGAGACGGCGCGCAGAGCCACCGCCGTACTCACACAGATAGCCCGCAGAGGACTAGAGGCAACGCAGGAGACGCTTCTAACGTTGAACATAGAAACAGCTAACAGTTTGTCCTTCAGCGACCCACACTCGATGTTCACCATCTCTATGAACGAGCGGGACGGCAGCGGTTCCGATCCGGTCATCAAAGAGGAGCCGGGGTCTCCGAAGCGGGAAGATCTCCCTCGAGAAGCAGCGTTCGAGGTCGTCTTCGCGGACGACTTCGAGTCCGATGATCGGATGCCGAGGGAGATCGAACCTCTCAAAGTCGAAGACAGCACCGAAGGCTTCCCGCGCGACGAGCAAGAAACGCGCTACTTCTGCGACACGCGCGACATCACATCCGAACATGACTCCGTGAAGCACGAGAGAACTCACCACCGCGAGATACACTCCTGCGAGCGGTGCTCGAAGACTTTCAAGCTGAAACGCAGTCTGGTGAAACACATGTCCGTCCAcagcggcgccggcgccggcgagCCGGTCGAAGCGCAGAAACAGCGGAAGCCGCGCTCCTACACCTGCGACGTCTGCGACCGGAGCGTGAACACTCTCTACAACCTGAAGAAGCATCGCGCGACGCACACCGGCGACACCTTCACCTGCGAGAGCTGCTCCAAGAGCTTCGCGAGTCGCGACGTCCTGCGTAAGCACCTGCGGACCCACTCGCTGCAGCACGCGTGTCCGCACCGCGGCTGCGGCCGCACCTTCGCGCAGAGGAACCAGCTCACGCTGCATTCCCGCGTGCACACCGGCGAGCGGCCCTACGTCTGCGCGGACTGCGGCAAGGCGTACACCCTCATGGACTCGCTCAAGTTCCACCGGCGGACGCACACCGGGGAGAAGCCGCACGCGTGCACCGTCTGCGGCAAGGCCTTCCAGAAGCGGTCCCGCCTCGACAAGCACATGCGGACGCACGCCCGCAGGGAGCCGTGCGAGTGCCCCGAATGCGGGAAGACGTTCTCGCTGGCGGTGCACCTCGAGACGCACATGCTGACGCACGGCGCGGCTCGGAGGCATGCCTGCTCGCGCTGCGACGCCGCGTTCCTCGCGCGCGGCTCGCTGGTCGCGCACGCGCAGACGCACGAGCACACGCGCGTCTGCGACGTGTGCGCGCGCAGCTTCCGCGACGAGCACGCGCTGCGCAGCCACCTCCGCACGCACGCCGCGTTGAAGCCGCACGCCTGCGACCACGCCGGCTGCGGGAAGAGCTTCGCGCGACGCTTCCATCTGAAGGAGCACTCGCGCGTGCACAGCAAGGAGCGTCCGTTCGCGTGCGCGGACTGCGGGAAGCGCTACACGCAGACCAGCTCGCTGCTCGCGCACCGGAGGCTGCACTCCGGGGAGCGACCGTTCGTCTGCGACATCTGCTCGCGCAGCTTCACGGACAAGTTCGCGCTGCGCAAGCATTCGCGAGTGCACGGGAgcggcggaggcggaggcggaggcggaggcgacAAGGAGCTCGCGTGCGGCGCCTGCGACCTGCGCTTCGCGTATCCGAGCGCGCTGCTGAAGCACAGCGCCGTACACAGCGGGGAGAAGCCGTACGCCTGCGACGTCTGCCGCAAGCCGTTCGCGCGGAAGACCAGCTTGAGGAAGCACGCGAACACGCACCTGCGAGACGAACAGCTCTAA
Protein Sequence: MSSYVCSVCLSGDRSIKFIENLELQDTFEKLTSFKLRVADALCFVCVAQLQRCRRFAETARRATAVLTQIARRGLEATQETLLTLNIETANSLSFSDPHSMFTISMNERDGSGSDPVIKEEPGSPKREDLPREAAFEVVFADDFESDDRMPREIEPLKVEDSTEGFPRDEQETRYFCDTRDITSEHDSVKHERTHHREIHSCERCSKTFKLKRSLVKHMSVHSGAGAGEPVEAQKQRKPRSYTCDVCDRSVNTLYNLKKHRATHTGDTFTCESCSKSFASRDVLRKHLRTHSLQHACPHRGCGRTFAQRNQLTLHSRVHTGERPYVCADCGKAYTLMDSLKFHRRTHTGEKPHACTVCGKAFQKRSRLDKHMRTHARREPCECPECGKTFSLAVHLETHMLTHGAARRHACSRCDAAFLARGSLVAHAQTHEHTRVCDVCARSFRDEHALRSHLRTHAALKPHACDHAGCGKSFARRFHLKEHSRVHSKERPFACADCGKRYTQTSSLLAHRRLHSGERPFVCDICSRSFTDKFALRKHSRVHGSGGGGGGGGGDKELACGACDLRFAYPSALLKHSAVHSGEKPYACDVCRKPFARKTSLRKHANTHLRDEQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01170780;
90% Identity: -
80% Identity: -