Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292448.1:1353692-1357074[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.034 2.1 9.3 6.3 1 20 200 219 200 222 0.94

2 14 7.5e-06 0.00046 20.9 2.4 1 22 228 249 228 249 0.97

3 14 4.1e-05 0.0025 18.5 2.0 1 23 271 293 271 293 0.98

4 14 3.1e-05 0.0019 18.9 1.2 1 21 299 319 299 320 0.94

5 14 0.0062 0.38 11.7 0.9 1 23 331 353 331 353 0.96

6 14 1.2e-06 7.4e-05 23.4 2.1 1 21 359 379 359 380 0.96

7 14 2.6e-05 0.0016 19.2 3.6 2 23 389 411 388 411 0.97

8 14 0.00032 0.02 15.7 2.8 1 23 417 439 417 439 0.98

9 14 6e-07 3.6e-05 24.3 1.1 1 23 445 467 445 467 0.97

10 14 0.00091 0.056 14.3 0.4 1 21 473 493 473 495 0.95

11 14 3.6e-07 2.2e-05 25.0 2.6 1 23 501 524 501 524 0.97

12 14 1.1e-06 7e-05 23.4 0.3 1 23 530 552 530 552 0.98

13 14 6.8e-05 0.0042 17.8 0.3 1 23 558 580 558 580 0.98

14 14 0.0014 0.085 13.7 0.2 1 22 586 607 586 607 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.034	2.1	9.3	6.3	1	20	200	219	200	222	0.94
2	14	7.5e-06	0.00046	20.9	2.4	1	22	228	249	228	249	0.97
3	14	4.1e-05	0.0025	18.5	2.0	1	23	271	293	271	293	0.98
4	14	3.1e-05	0.0019	18.9	1.2	1	21	299	319	299	320	0.94
5	14	0.0062	0.38	11.7	0.9	1	23	331	353	331	353	0.96
6	14	1.2e-06	7.4e-05	23.4	2.1	1	21	359	379	359	380	0.96
7	14	2.6e-05	0.0016	19.2	3.6	2	23	389	411	388	411	0.97
8	14	0.00032	0.02	15.7	2.8	1	23	417	439	417	439	0.98
9	14	6e-07	3.6e-05	24.3	1.1	1	23	445	467	445	467	0.97
10	14	0.00091	0.056	14.3	0.4	1	21	473	493	473	495	0.95
11	14	3.6e-07	2.2e-05	25.0	2.6	1	23	501	524	501	524	0.97
12	14	1.1e-06	7e-05	23.4	0.3	1	23	530	552	530	552	0.98
13	14	6.8e-05	0.0042	17.8	0.3	1	23	558	580	558	580	0.98
14	14	0.0014	0.085	13.7	0.2	1	22	586	607	586	607	0.93

Sequence Information

Coding Sequence: atgtcGTCGTTGGAGTCTGTGTGCCGCGCTTGCTTACTCAGAGATGTTAGCTCGAGCAGCCACAGTCTGCAAAGCATTCAACTCAAAGAAATATACGAAAAATTCACAAGTACCAAGATCAGCACAGAAGATAGCATGCCCAAAGCTATTTGCCCCATTTGTTACTCTCAGCTGAAGAGTTTTCATATATTCTCCAAAATGGTTCTTAAGACAGAAGGAATCCTGAGAGATCTACTTAGCAGGGGTATAAAAGACGTAACACTTAATGCCAGTGATATGCTAAACCTGCCATTGAAACATGACCTAACAATGACTACTGCTCAGACCATATCAATAGATGACTTTACAAACACTGACTGTGATGATAACCAATCGATTCTGCCTACCCCATTAAACAGACaagtaaatgtatgtatgtatgacagAGCACCAGTAACGGTGAAGATTGAAGTAAATGTGAAGAAAGAAACCGTTTCAGACGATGAAAATTTGGTTAAAAGCGAGAAGAATAGAGAGAATTATGTTATAATAGACAATAGTTTGAAGAATAAGCTTTCCCCAATCATAGACGTGACATCCCATGCCAAAAACACGCATTTCAGTTGTCATTTGTGCAGCAAACAGTTTACTACAATACACCTTCTAAAATCACATTTGATTTGTCATTCCGGAGAAAAGCCATATACTTGTGAGAAGTGCACAAAAGCATTTTCTAGAAAACATAATATGGTGCAACACATGAAAACTTGTACACCTATAGAACAGTCCCAGCTGAAATACGAAACTAATCCCGATGACATAGGCCTGTATTTCTATTGTGCAGTTTGCAGCAAAAGATTTACCAAAAAGAATCTTCTGAAGTCTCACTTAATAACTCATTCAGGGGAAAAGCCACATGCCTGTGAGGGATGCAAGAAATCATTCTCTCGGAAGCAGTCCATGAAAGAACATATGAAAATATGCGCTAAAGTTAAATCCAGACCCCCAACGTTCCCCTGCTCGTTTTGTTCCCAAACATTCACATCTGAAAGTGATCGAAGTAACCATGTAACAATACACGCTGTAGATAAGCCATATAAATGTGAGAAGTGTCATAAAGCATTCTCTAAGAAACCGAATTTGAAGCAGCACATGAAAATATGCTTTCTAGAAAACGAAAGAGTAAAATGCACGATTTGTACCCAAACATTCAGCAGAAGAAGAGATCtatgcaaacatttaaacatGGATCACATAGAAGAAAAGCCATATATCTGCGACAGATGCAGCACTAAATTCTGGTATAAAAGCCATTTAAAAGCGCACATGAGAATCCACACCGGGGAGAAACCTTTCGCTTGCGAGATGTGCGGAAAAACATTCACATTGAGAAGCCATTTGAAAGCCCATATCGGCACTCACACGGGCGTGAAGCCATATGCCTGCGAAATCTGCGGTAAAGCGTTCCTTGCTAACGGTAACTTAAGAGAGCACATGCGTTGCCAttctggagaaaagccatatgcttgCAACAAGTGTGGCAAGACTTTCGGTCACCAGAGCACTTTACGACAGCACCTTCGCAGAGTTCACACGGAGGCAAAGCCATTTGTCTGCGATATATGTTCGCTGTCATTCAATAAGGAGAGTAGTCTGACCGCACACATGAGAATTCACACAGCGGCGCGGCCATACGCCTGTGATGTATGCAATAAGTCATTTTTTGAAGCTCGCTATCTGAAAGGTCACATGCAAGTGCACTCTGAAGAGAGGCCGCATGCCTGTGAGGCTTGCGGGAACGCATATAAACGACCTGAGCATTTGAAATTGCACATCAGATCTAAATGCAAGGCCAGCTTCTCGATACCAAGCTTTTTCTTGCAAACATAG
Protein Sequence: MSSLESVCRACLLRDVSSSSHSLQSIQLKEIYEKFTSTKISTEDSMPKAICPICYSQLKSFHIFSKMVLKTEGILRDLLSRGIKDVTLNASDMLNLPLKHDLTMTTAQTISIDDFTNTDCDDNQSILPTPLNRQVNVCMYDRAPVTVKIEVNVKKETVSDDENLVKSEKNRENYVIIDNSLKNKLSPIIDVTSHAKNTHFSCHLCSKQFTTIHLLKSHLICHSGEKPYTCEKCTKAFSRKHNMVQHMKTCTPIEQSQLKYETNPDDIGLYFYCAVCSKRFTKKNLLKSHLITHSGEKPHACEGCKKSFSRKQSMKEHMKICAKVKSRPPTFPCSFCSQTFTSESDRSNHVTIHAVDKPYKCEKCHKAFSKKPNLKQHMKICFLENERVKCTICTQTFSRRRDLCKHLNMDHIEEKPYICDRCSTKFWYKSHLKAHMRIHTGEKPFACEMCGKTFTLRSHLKAHIGTHTGVKPYACEICGKAFLANGNLREHMRCHSGEKPYACNKCGKTFGHQSTLRQHLRRVHTEAKPFVCDICSLSFNKESSLTAHMRIHTAARPYACDVCNKSFFEARYLKGHMQVHSEERPHACEACGNAYKRPEHLKLHIRSKCKASFSIPSFFLQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -