Pfla010313.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma flavofasciatum
Gene Symbol
-
Assembly
GCA_958496245.1
Location
OY292430.1:11647209-11652381[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.1 69 4.6 2.9 1 23 20 42 20 42 0.96
2 21 4.4e-05 0.0027 18.4 2.6 1 23 56 78 56 78 0.98
3 21 0.12 7.3 7.6 0.4 6 23 87 105 85 105 0.94
4 21 2.1e-05 0.0013 19.4 0.5 1 23 170 192 170 192 0.98
5 21 0.0015 0.092 13.6 1.9 1 23 198 220 198 220 0.99
6 21 0.011 0.69 10.9 3.3 2 23 229 250 228 250 0.97
7 21 0.00016 0.0095 16.7 2.7 1 23 272 294 272 294 0.98
8 21 0.0068 0.41 11.6 0.2 3 23 302 322 300 322 0.96
9 21 0.0079 0.49 11.3 0.9 2 23 332 353 331 353 0.94
10 21 0.00078 0.047 14.5 0.5 1 23 375 397 375 397 0.99
11 21 0.4 25 6.0 0.1 1 23 403 425 403 425 0.95
12 21 0.0016 0.096 13.6 0.8 2 23 434 455 433 455 0.96
13 21 1e-06 6.1e-05 23.6 2.1 1 23 461 483 461 483 0.99
14 21 6.2e-05 0.0038 18.0 0.2 1 23 489 511 489 511 0.98
15 21 2.7e-07 1.6e-05 25.4 2.4 1 23 517 539 517 539 0.98
16 21 5e-07 3e-05 24.6 1.0 1 23 545 567 545 567 0.99
17 21 0.15 9.2 7.3 5.2 1 23 572 595 572 595 0.97
18 21 2.7e-05 0.0017 19.1 0.2 1 23 600 623 600 623 0.97
19 21 0.068 4.2 8.4 5.0 1 23 629 652 629 652 0.96
20 21 0.23 14 6.7 0.7 2 19 685 702 684 704 0.79
21 21 0.03 1.8 9.5 0.4 2 23 710 732 709 732 0.96

Sequence Information

Coding Sequence
ATGGTAATGGAACATGTAACCAGTTGTGTCAAGGTTTTACTAAAACGCACCCAGATTTATCATTGTGGGAAGTGCACAAGGGGCTTCTTGCACTATGCCCCTCTTAATGAACATCAGAAGGAACATTCAGGacaaaaactacagaacaaaATCATATTGAAGCCTCATAAATGTAAGGAGTGTGAACTGAGGTTTGTGGAGCGCTCCACGCTGAACACTCACATGAAAGTTCATAAACCATTCAGCCATGTCTGCCGATGCGGCATTGGATTCTACCAAAGGGAAGATCTCTCCACACACAGGAAACTGGTCCACCCAACAGAACCAGCAGAGGAAACTGAACCAAAAATCAAATCAGAATTTACGATCCAGCCAATGAAAAAACGACGCAAACCACAAGTCAAACCAAGACTTATAGCGAAACTTGCATTCCCTAAAGTCAAATTAGAAAAACTTAAGAGAATCAATGACAAAGAAAACATATTTCCTAAAAACAAAGAAGgtgactttgaatgttttgtTTGTGGACAGGCTTATAAAGATAGAACTCAATTTCAAGCTCACATTAACTCGCATGCTGGCAAATCTAAATACACCTGTAACAAATGCCACTCTGTTTATAAAACACAAGCAGCTATTATTGTGCATAGAAAAACACATGAAACTGTCCACGATGGAACATGGAAGTGTGATGTctgcaaaaaaatctttaaatgcaGTAAATATTTAGTATACCACATGATGCGCCACACTGGTGAAAAACAGAAGCATTCTGTTAAATATGAAGGACACGATAAAAACAAAGATGGCGACTATGTATGTTCTGTTTGTGGACACACTTGCAAAGATGCAACACAATTTTTTGCTCACATTAACTCGCATACAGGCAATTCTCGACTTGCATGTGACAAATGCCCATACAGCTCTAAAACTCAAGCAAATATAATCgttcataaaaaatcacatGAAGCTAACCACAAGGAAGGAATATGGGAGTGCGACGTGTGCCAAAGAATCTTCAAGACCAGTAAATCTTTGGTATGCCATATGGCGCTCCATACTGGCGAAAAACAGAAACAGAATCTTAAATatagggaaaataataaaaacaaagatgGCGACTATCAATGTTCTTTTTGTGGACAGCTTTACAAGGATAAAATTGAAATGTTTGCACACATTAACTCGCACACGGGCAAGTGGCGCTATCTCTGTGACGCATGCCCTTTCGGTTCTAAAACTCAAGCAGCTATTCaagtacatagaaaaacacatgAAGCTGGTCACAATGGAATATGGAAGTGTGAAATGTGCAATAAAATTCTAAAGTCCTCTCATTCTTTAGTGATTCACACATTGGTCCACACAGGAGAAAAACAGTATAAATGCACTTTATGCTCCAAAAGTTTCACGCAGAGTGGAGCTTTGAAATCTCATCTGAAGAGGCATGCAGGCATCTATCCTTTCGAATGCGGACAGTGTAACAAGCGTTTCGTGGATAAAGGCGCTTTAAGTCTCCACGCGCGCCTGCATAGCGGCTTGAAGCCGTACAGTTGCCAGCACTGCGGGAAAGAGTTCTCAGACCCTTCCGCTTTCAGGAGGCACAAGCGAATCCACACCGGTGAGAAACCGTACCGCTGCAAATACTGTCCGAAAGCTTTCAGCGATAACAGCGCTTATATAGTTCACACGCGTAAACACGAGGGCTATACCTACCCCTGTCACCTCTgcaaaaaacaactgaacgacCGCAATGCCTTGTACATTCACAAAAAGAAATGCCACCAGAATAAAGTTTACGAATGCGACTATTGCGGTAAGAAAGCGAGGGTAAAGTCCTATTTAGTCAATCATATCAAAATCGCGCACTTGAAATCGCAAAGATATCGGTGTAGTTACTGCCAAAAACAGTACCTTTATAAGCACACTTTCAATAGGCACATTGATTCTGAGCATGGAACAATGAATCAAGATAAGAATGAGAAATCTAAGATCAACATGAAAGATCACATTGTTCAAGTACATTGTGGAAGTGAAGATAAATGTGAAAAGGTCTGCCCGGAATGCCcgaaaaagtttaaagaaataactgCAATTTGCGAACATCGCTCATGTCATGATATAGTTGTTTGTGACTTTTGTAAGGTGAAATTTGAAGGCAAACAAAAATTGATAGATCATATTTCGACCAAACACATGTTAACGAGCATGTATTGCAAATCAAAGCATTGTGTGCCTGATGGTTTTACGCACAAGCTGAAATCTGAAACCACAGATGTAACTTATgagctataa
Protein Sequence
MVMEHVTSCVKVLLKRTQIYHCGKCTRGFLHYAPLNEHQKEHSGQKLQNKIILKPHKCKECELRFVERSTLNTHMKVHKPFSHVCRCGIGFYQREDLSTHRKLVHPTEPAEETEPKIKSEFTIQPMKKRRKPQVKPRLIAKLAFPKVKLEKLKRINDKENIFPKNKEGDFECFVCGQAYKDRTQFQAHINSHAGKSKYTCNKCHSVYKTQAAIIVHRKTHETVHDGTWKCDVCKKIFKCSKYLVYHMMRHTGEKQKHSVKYEGHDKNKDGDYVCSVCGHTCKDATQFFAHINSHTGNSRLACDKCPYSSKTQANIIVHKKSHEANHKEGIWECDVCQRIFKTSKSLVCHMALHTGEKQKQNLKYRENNKNKDGDYQCSFCGQLYKDKIEMFAHINSHTGKWRYLCDACPFGSKTQAAIQVHRKTHEAGHNGIWKCEMCNKILKSSHSLVIHTLVHTGEKQYKCTLCSKSFTQSGALKSHLKRHAGIYPFECGQCNKRFVDKGALSLHARLHSGLKPYSCQHCGKEFSDPSAFRRHKRIHTGEKPYRCKYCPKAFSDNSAYIVHTRKHEGYTYPCHLCKKQLNDRNALYIHKKKCHQNKVYECDYCGKKARVKSYLVNHIKIAHLKSQRYRCSYCQKQYLYKHTFNRHIDSEHGTMNQDKNEKSKINMKDHIVQVHCGSEDKCEKVCPECPKKFKEITAICEHRSCHDIVVCDFCKVKFEGKQKLIDHISTKHMLTSMYCKSKHCVPDGFTHKLKSETTDVTYEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-