Pfla001763.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292420.1:11530046-11531893[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-09 2.5e-06 27.5 0.0 2 38 19 55 18 63 0.88
Sequence Information
- Coding Sequence
- ATGCCGCGTAAATACGTTAAGAAAATACCTACAAGGaattataaaaactattcaGAGGAGACTCTTCGAGATTGTCTAGCAGCAATAGAAAATAAAGACTTAACACAAAGAAAGGCCAGTAACAAATATGGGATTCCAAGGAGGACTATAATAAACCATCTAAGACTTTTACGACGCCACGAAACATCTAGACCACCAGGAGCACCTACTACATTTACAAttgaagaagaaaaaatattcgtaTCATGCATACAAAGATTGAGCGAGCATGGCTTTCCACTTACTAGTTTCGATTTGCGATTAGTCATCAAATCTTATCTGGATAAAATTGGAAGGACAGTTCCCAAGTTTAAAAACAATTGCCCAGGTCTCGAATGGGTGTCCAGTTTTTTGAGAAGAAATGCCGAGTTGTCACAGCGTATTGCTGCTAATATAAAACGCAGTAGAGCTGGCATTGATCGGGACACCCTCACCGATTATATCCAAAATTTGACTGAGGTGGTAAATGATGTTCCACCAGAGAATATATGGAATTACGACGAAACTAACTTGTGTGATGACCCTGGGCAAAAAATGATTCTGACAAAGAGAGGCACCAAGTACCCTGAAGTTATAAGGGATACATCGAAGAGCTCTACATCGCTCATGATTGCTGGAAGTGCGGATGGAGAACTTCTCCCGCCTTATGTCGTGTACAGGTCTAAGCAGCTATGGAATACCTGGACAGAAAATGGACCGAAATATACTCGCTACAATTGTAGCCCTTCCGGCTGGTTCGATATGAATTTGTTTAATGACTGGTTTTTTTCACTTGTCCTGCCGAGACTAAAAAAACAGGAAGGTGCTAAAGTCCTCATAGGAGACGATTTATCGTCGCATATTTCGGTGGATGTTCTTAGAGCTTGCAATGAAAATAACATAAGGTTTGTATGCCTCCCTCCGAACAGCACCCACTTGACGCAGCCACTCGATGTCGCCTTCTTTCACCCAATGAAAGTTGCATGGCGGAAAATTCTAACGACTTGGAAAAGTTGCGAACAAGGTAGGAGGGAAAAAACGGTGCAAAAAAGTAGTTTCCCACTCTTACTAAAAAGACTTATTGACGATTTGGAAGAAAAAgcaaaagaaaacttaaaatcCGGTTTCAGAAAATGTGGGATTTGTCCGATCGATGCAAATGTCTTATTGGAGAGATTGCCTAAACCTGCTGATAAGACTGTGGCAGAAGATTCATTTCTGGAAACACTTCAAGCGAAGAGAGTGGAATGGACTGAAGGCGTTAACCCAAAAAGACGACGTACAAAACTGAACATAGTTCCGGGAAGAAGTGTCACTGAGCTGATAGACACTCAAGAGGACAACAAGGAAAACGAGGATGTCGAAGAACCATGTTTTGAAGCTGAAGCTCAGGGCTCCACTTCTGAACCTCGTCGTACGAGATTTCCCAGTGATAGCACATACGCTGAGAGTGAAATATCTCTTCATGACTCTTCAAACGATGGTACAATGGACGACTTATTGGAGACGATGTTAGAAGAGTCAAACACGGAAAATGACACCGAAagttctaaaacaaaaaaaataaaaccacttaTTAAGACCGAAGGACAATATGTAGCTTTCACATACGAAAGCGAAGTTTTCCCAGGTGTCATCacgaaaataaatgataaaggaCCATACATATCTTCAATGAAAAGATCTCTTAAATACTGGAAATGGCCAAAACCGAAGGATGAGATCCAATATGATTGGAAGGAAGTTAAGGGATGTATATCAGCACCAAAAAAAATTGGTCGTCGTGAGTTTTATACTGTTCCTGAACTTGATCAAATCTGGGGGATatga
- Protein Sequence
- MPRKYVKKIPTRNYKNYSEETLRDCLAAIENKDLTQRKASNKYGIPRRTIINHLRLLRRHETSRPPGAPTTFTIEEEKIFVSCIQRLSEHGFPLTSFDLRLVIKSYLDKIGRTVPKFKNNCPGLEWVSSFLRRNAELSQRIAANIKRSRAGIDRDTLTDYIQNLTEVVNDVPPENIWNYDETNLCDDPGQKMILTKRGTKYPEVIRDTSKSSTSLMIAGSADGELLPPYVVYRSKQLWNTWTENGPKYTRYNCSPSGWFDMNLFNDWFFSLVLPRLKKQEGAKVLIGDDLSSHISVDVLRACNENNIRFVCLPPNSTHLTQPLDVAFFHPMKVAWRKILTTWKSCEQGRREKTVQKSSFPLLLKRLIDDLEEKAKENLKSGFRKCGICPIDANVLLERLPKPADKTVAEDSFLETLQAKRVEWTEGVNPKRRRTKLNIVPGRSVTELIDTQEDNKENEDVEEPCFEAEAQGSTSEPRRTRFPSDSTYAESEISLHDSSNDGTMDDLLETMLEESNTENDTESSKTKKIKPLIKTEGQYVAFTYESEVFPGVITKINDKGPYISSMKRSLKYWKWPKPKDEIQYDWKEVKGCISAPKKIGRREFYTVPELDQIWGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00826911;
- 90% Identity
- iTF_01171403;
- 80% Identity
- -