Basic Information

Insect: Perizoma affinitatum
Gene Symbol: -
Assembly: GCA_961405105.1
Location: OY560186.1:17152596-17162238[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.022 1.4 10.0 2.0 1 23 466 488 466 488 0.96

2 9 0.0001 0.0067 17.3 0.6 2 23 496 518 495 518 0.95

3 9 1.6 1e+02 4.1 2.0 1 23 522 544 522 544 0.96

4 9 0.0048 0.31 12.1 2.0 1 23 549 572 549 572 0.96

5 9 0.11 7.4 7.7 2.1 2 23 612 634 612 634 0.96

6 9 0.91 59 4.9 0.8 1 21 642 662 642 666 0.91

7 9 0.05 3.2 8.8 5.1 1 23 742 764 742 764 0.94

8 9 0.0096 0.62 11.1 1.1 3 23 772 792 770 792 0.95

9 9 0.0015 0.099 13.6 0.3 1 21 797 817 797 818 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.022	1.4	10.0	2.0	1	23	466	488	466	488	0.96
2	9	0.0001	0.0067	17.3	0.6	2	23	496	518	495	518	0.95
3	9	1.6	1e+02	4.1	2.0	1	23	522	544	522	544	0.96
4	9	0.0048	0.31	12.1	2.0	1	23	549	572	549	572	0.96
5	9	0.11	7.4	7.7	2.1	2	23	612	634	612	634	0.96
6	9	0.91	59	4.9	0.8	1	21	642	662	642	666	0.91
7	9	0.05	3.2	8.8	5.1	1	23	742	764	742	764	0.94
8	9	0.0096	0.62	11.1	1.1	3	23	772	792	770	792	0.95
9	9	0.0015	0.099	13.6	0.3	1	21	797	817	797	818	0.96

Sequence Information

Coding Sequence: ATGTCAAAAGTGATAGTGTGTCGTATCTGCCTCCGAACCGATGCAGGAGCGCGGGACATAGCGGAAACCCTTGTCGAGTTGCACGATGAGATTTGCGATTATGATGTGAGTTTTTGGATATTTAAAAGGCAGCTATCTGAAGCTCCTGACCAGCGTTGCTTGCTGAGACATTGCGACAACGGACCCAAAGATACAGGGATATATGCAAACAAAACCATGAAGTACTGTGTGATATGTGAATACCAGCTTAAAAAGTTCCATAGCTTTAAACTCCGATGTAATCAAGCAAACAAGGTGCTCAAAGCATGGAGGCAAAAGAAACTTACAAAAATTCCAGAAAATCTTCATGAGCAGCTTCCACCATCTTCAATTGGGATATGCAACAGCAGAGCGCGTCACAAGGTGTACGAATACCTTCACCCTGACCACGAGCCTAACCCTGACCTTGAACTCACACCTGACCCTGATATTACATTTAACATTGACATCAGACCCGACCTTGGCCTCTGTATTGATCCCGAACTCAGAATTGACCCTGACCTGAGACCTGACCTTGACCTTGGATCAGACCCAACACTGATAAAAACCGAAAAAGAggatacagaaaaaaatagcTACAGATTCAtcacaaaagaaacaaataagGAAAACCCTTTGCCAGAAAATGActtgaaaaaaaatgatttcaatcaagtattacaaaaaaatgagtTTGTGGATAACTTTGAGGAAGTTCTGCAGAAAAACGAATATGAGGAAGACTTAAGCTTGCATTTACAAGAAGATGACTTACCATTAAGCGATTTAAAAGAAGAAAACGACAACTTCGACTTCCTAGAGAGTGATTTTGAAGAAAATGGTTCTAGTTTCTCTATCGAAAacgataatataaataaacctaaAAGGGTTGCTAAAGGTATTGCCAAAGGAAAAGTGAAGACAAGAGCGAGAAGCAGAGTTAAGGCTTTATCTGAAGTCAAATATGAAGAAATTGATGATATATCATTAGCGGAACTCATCCAAAAATGTGGCATTGACGATAAGGTGGTGAAAGCGCGCCAGAAATTCCTCAAAAACAAAGCGAAACTAAAACACAGAATACTAGAAATATTAGACAGTGGACAATTTGATGATCTCGGTGATAACCTTATCATGAATAAGGATATTTTCGTTAAAGTATTCAATAGGTATGATAAATGTGATATGAGGATGCTGTCGATGAAACCAGATTCACCGGAACTACCCCAAAAGCTGAAGAAGTTTCTTCTGTACCTCCTCCGGAAGTACAACCCTGAGTACGAGACAGTCTTCCATGTGGAGTACCTCGATACTGATGAGAAAAAACTGCAGGAGTTCAACCGGCGTAAGGATGGCGCATCGTACATAGGGGCGCCTTACAAATGCGAACTCTGCTACAAAGGCTTCGACGCGCAGAGCCATCTCGACTACCACAACAAATGGCACAAGCCGACACCCAACGACATAGTGTGCAATATATGTCCAATGCGTTTCGTTTCCAAATCTACTTACAAAGCGCATCGCAAGAACAACCATACCGTCGTATACACGTGCAAGCAGTGTCCTGTGATTACTTACCACTTtTCTGTGATGATAAACCACTACAATCAACACAAGGGCGTGGAATACCATTGTCCGACCTGTCTCAGCGTTTACACTAATAAAACGACGTTAAACAATCACCGTCGCGAGGCGCACGCGACATCGCACATCTGTACCGCGTGCGCGAGGAGCTTCGTGTCCGAGAAAGGATTGTTCTTCCACAGGAAATACAAGCATAAAGACGAAGCTGAGGCTAAGCCGGAGGAGACGGCGACCTGCCTCGAGTGCAACATCACGTTCGACTCACATAAAGTGTACATGAAACACGAGCGCAGTATGCACACACGCAGACCTGAGACTGTATACAAATGCTACTTTTGTAAAGACGGCTTCGACAGCATAGAGGCGCTCCGCAAACACAAACTGGAGTTGAACCACCAGAGGGCGCCCAAGACGGTCGTACACCGAACGTCTATAGGCGTGAAGCCGAGCGGGGCGAAGCGCACGAGGCGGACGCGGGTCAGCGACCCCGACAAACCTTACAGGAAGTGTCCAGTCTGCCTTGCGGAGGTACCGAACGCGTTCCCCACTAGTCTGTACATGCATTATCTGGAAGTGCATCCGGACGTGCCTTACAACTCCGTGTACACTGACACGAAGGACTACCTGTGTGAGCTCTGCGGGAAGACCTTCCGGGTGTATTGCCACTACTTAGACCACAAGAACCAGCACACGGGGGCGAAGCCCTACGGCTGCAAGGAGTGCCCGGCGCGCTTCGCGACACGCAAGCATCTCGTGTACCACTCTGAGCGGCACAGGCCTCCGCGGTACCAATGCAAGCAGTGCGGCAAGCTGTTCCTCAGCGCTGCCAACCTCTTCGCGCATCGACGGCAATTAATAGCATAA
Protein Sequence: MSKVIVCRICLRTDAGARDIAETLVELHDEICDYDVSFWIFKRQLSEAPDQRCLLRHCDNGPKDTGIYANKTMKYCVICEYQLKKFHSFKLRCNQANKVLKAWRQKKLTKIPENLHEQLPPSSIGICNSRARHKVYEYLHPDHEPNPDLELTPDPDITFNIDIRPDLGLCIDPELRIDPDLRPDLDLGSDPTLIKTEKEDTEKNSYRFITKETNKENPLPENDLKKNDFNQVLQKNEFVDNFEEVLQKNEYEEDLSLHLQEDDLPLSDLKEENDNFDFLESDFEENGSSFSIENDNINKPKRVAKGIAKGKVKTRARSRVKALSEVKYEEIDDISLAELIQKCGIDDKVVKARQKFLKNKAKLKHRILEILDSGQFDDLGDNLIMNKDIFVKVFNRYDKCDMRMLSMKPDSPELPQKLKKFLLYLLRKYNPEYETVFHVEYLDTDEKKLQEFNRRKDGASYIGAPYKCELCYKGFDAQSHLDYHNKWHKPTPNDIVCNICPMRFVSKSTYKAHRKNNHTVVYTCKQCPVITYHFSVMINHYNQHKGVEYHCPTCLSVYTNKTTLNNHRREAHATSHICTACARSFVSEKGLFFHRKYKHKDEAEAKPEETATCLECNITFDSHKVYMKHERSMHTRRPETVYKCYFCKDGFDSIEALRKHKLELNHQRAPKTVVHRTSIGVKPSGAKRTRRTRVSDPDKPYRKCPVCLAEVPNAFPTSLYMHYLEVHPDVPYNSVYTDTKDYLCELCGKTFRVYCHYLDHKNQHTGAKPYGCKECPARFATRKHLVYHSERHRPPRYQCKQCGKLFLSAANLFAHRRQLIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01171968;
90% Identity: iTF_01171968;
80% Identity: -