Paff004775.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560188.1:3584827-3586681[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 1.2e+02 3.9 0.7 5 20 46 60 36 61 0.85 2 10 0.033 2.2 9.4 4.0 1 23 98 121 98 121 0.95 3 10 2.6 1.7e+02 3.4 0.0 2 20 148 166 148 166 0.89 4 10 8 5.2e+02 1.9 1.2 5 23 196 215 193 215 0.89 5 10 0.049 3.2 8.9 0.1 1 23 219 242 219 242 0.95 6 10 8e-06 0.00052 20.8 2.0 2 23 246 268 245 268 0.95 7 10 0.069 4.5 8.4 0.5 2 23 274 296 273 296 0.93 8 10 0.00025 0.016 16.1 0.5 2 23 304 326 303 326 0.95 9 10 0.067 4.4 8.4 0.2 2 20 333 351 332 354 0.95 10 10 0.0097 0.63 11.1 0.5 6 20 364 378 363 380 0.94
Sequence Information
- Coding Sequence
- ATGAAGACGTGGTTAGCTTCCAGCCCTTCAAGTTGGGTGCCAAACTGTCGTGTACGATTTGTTACTTCAGAGTTTGTGAATTTCGCGATTTTACTCGTGCATACTACTTGTAAGCATCAGCATAACGAGGATAATCTTTGTGGGAGGACTTTCAAACCGTATCAGATGAAGTTGCATCTGGTTTATGAGTACAGGAAGGTGGCCTTGAAGAATGAACAGCAACTCGCAGCGTTGCTTTTAACTATCATTCAAGACTCCACCATCATACCATTCCGATGGAACAAAGGAAATTTCATGTGTTTCTATTGCCCCTCTACTTTTAACAAAAGCACATGTTTGAGAGAGCACAACCGCAACGGCCACGATGAAATCAATATCACAGATATCATAACGCGATTCATGTACAACGACCGCAGAATCAAGCTAGATGTCGCAACAGCAAAATGCAACCAATGCGACCAACAAATCATAGATATTTCAGACTACATCGAACACCTCTGGGAGAGACATGACGCGGGATTTGACACAGACGTCGCAAAACACTTCATTTCCTTTAGACTCTCGGACGAAGAGATGAGCTGCATCGAATGCGGTCAACACTTCCAATTCTTCGGGCCGCTGCTCATGCACACGAATAAAACGCACATGGACAAACATATGTGCGAGATTTGCGGGCAGGGAATCGTCGGCAAAGTGAACATATATAACCACATGAAGCAAATCCACGCTGCCAAAGTCTGCAAGTATTGCGGAGAGACTTTTCGCACGCAATACGCACTGTTTCATCACGTGTCTTCTAACCACAAGACTGATGGCTTGAAATGTACTATATGTACCGAGATGCAGCCGAATCGTTATAAAATGAAGCGGCATATGGCTTTAGTGCACAACTGCAAGAACTCGCAGATCGTCTGTGAAATATGTTCGAAGGTTTTCACGCGGAACAATAAGTATGTTATGCATAAACAACGCGTGCACTTGAAGCTTAGAAATATGAAGTGTGACATGTGTGGATACGGCGCGTATGACGCCGAGGCTTTGAAGCTGCACATGGTCTGTCACGACGAATCGAAAGCTTTCTTGTGTGCGTGCGGGAAAACCTTTCGGAGATCTAGAAGTCTGTTAGTGCACAAAACTCATTGTTCCGGAAACTTATTAGAGGATACGTCTATGCCCCGCCAAGGCAAGCACAGCGATAATATCGTTTTAATGACATAA
- Protein Sequence
- MKTWLASSPSSWVPNCRVRFVTSEFVNFAILLVHTTCKHQHNEDNLCGRTFKPYQMKLHLVYEYRKVALKNEQQLAALLLTIIQDSTIIPFRWNKGNFMCFYCPSTFNKSTCLREHNRNGHDEINITDIITRFMYNDRRIKLDVATAKCNQCDQQIIDISDYIEHLWERHDAGFDTDVAKHFISFRLSDEEMSCIECGQHFQFFGPLLMHTNKTHMDKHMCEICGQGIVGKVNIYNHMKQIHAAKVCKYCGETFRTQYALFHHVSSNHKTDGLKCTICTEMQPNRYKMKRHMALVHNCKNSQIVCEICSKVFTRNNKYVMHKQRVHLKLRNMKCDMCGYGAYDAEALKLHMVCHDESKAFLCACGKTFRRSRSLLVHKTHCSGNLLEDTSMPRQGKHSDNIVLMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01171865;
- 90% Identity
- iTF_01171865;
- 80% Identity
- -