Paff013709.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560197.1:12323693-12335212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.37 24 6.1 3.2 3 23 48 68 47 68 0.98 2 14 4.3e-05 0.0028 18.5 0.2 3 23 106 127 104 127 0.94 3 14 3.8e-05 0.0024 18.7 0.2 1 23 129 151 129 151 0.96 4 14 0.18 12 7.1 0.0 1 23 188 210 188 210 0.97 5 14 3.8 2.5e+02 2.9 3.1 3 22 239 258 238 260 0.86 6 14 0.25 16 6.6 0.9 1 16 267 281 267 285 0.78 7 14 0.0027 0.17 12.8 0.2 1 22 295 316 295 318 0.89 8 14 2.7 1.8e+02 3.4 2.1 1 23 327 350 327 350 0.96 9 14 0.025 1.7 9.8 0.1 2 23 356 379 355 379 0.94 10 14 0.87 57 4.9 0.5 3 23 387 407 387 407 0.96 11 14 1.3 85 4.4 0.2 1 20 412 431 412 434 0.91 12 14 0.0058 0.38 11.8 0.8 1 23 440 462 440 462 0.96 13 14 3.1e-06 0.0002 22.1 4.1 1 23 468 490 468 490 0.99 14 14 0.00021 0.013 16.3 0.3 1 23 496 519 496 519 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCATCTATAGCttcttacatagtcctgagcaAGGACCTTACCACAGGGAGAGATGTTGTAAGGGAAGTCCCATTTGAGAATATCGAAATCAATGTTCCAAAGCAAACTGCTGTTGATATGATTGGCGGCATTCTCTGCTGCATTTGTGATTCAAAATTTGGAAACAAAAAGGTTTTCGAAAGTCATTATAAAACACATAACACAGGAGAGATTGTGTATACATGCGTGGCTTGTAAAAAGCAGCATTCTGCATACCAGAGCTTCCGCAACCACTGTTACCTCCAGCACATTGTAAAGCACAAGTTTGGATGCCAACAATGTGAAAAATCATTTTCAAAACAATCAGCTCTAAATGCTCACATCTCTGCTATTCACGACTTCAAGTGCGGGGAATGTGATGAAATATTTTCGTCCAAAAGGGATTTGCAAATACACAAAGTAGTTCACAGCAGAAAGAACAAAGAGGACCCTCCATACAACTGCATGAAATGCTCCCAAGTTATAAACAGCATCGACACATGCGAGCACCACATTGACGAGCACTGCGAGATCTTATACCCATGCCCCATTTGCGCGATCGTTCTGCCCACCAAGAAAGAAGCTACTTTGCATTTAACAATACATTTCGATGAGAAGATAACTCCTGATATGGTAAAGCCATCATGCACAGTCGAAGACAGCTCCTTAGACACATTGGGAGGCATCCTCTGCTGCCACTGCGATACATTATTCAAGAACCGATCGGATATCGACTCTCATTTTGCTTTGGAGCATGATGATAAAGTTGTTGTGTACTCCTGCAACATTTGTGAGAAGCAgtatacaaaatacaatctATTCGGTGATCACTGCTACTTTCACATCTCCAAAGATAAATTCCAATGTGAAGATTGCAACCGTCTGTTCCCCCGTCTGTCTCTGCTGGTGATGCACAACCTAGCCTTCCATTCGGAGGGTGCCGTGGACAAGCCGTACCGCTGCGACAGCTGCATCTACGGATTCAATTCACATTACCGTCTGCTGGAGCACAAGAGACTGGTACACGATGAACTCACCATCAAATGCCAGGTCCCGGACTGCACTGCTACATTCTTCGCGCCGAAAGATCTGATCCAGCATCAGCGCGCCCACTTGTCATGCGTGGAGAACTGGTGCCGTCAGTGCGGGCTGCAGTTCGCGACGCTGGCGGCGTGCGAGCGCCACCTGGACGTACATCGTCGCAAGCAGTACGCCTGCCCCGTCTGCGCGCGGCTCTACCGCGAGCGTTACCTCATGCTGAAGCACCTGCCGAAACACTTCGAGAGCGTGCTCCATATCTGCAAGATCTGCGGTAGATCGTACGGCGCGCGCAACCGCCTCATCCAACACGCGAAAACTCACGCGGAAGCGAAGAAATACAAGTGCAGCATCTGCAGCAAGAGCTTCTGTCGCCCTCACGAGCTGGAGCAGCACGAGCGAGTGCACACGGGCGACAAGCCCTACCAGTGCACCGCCTGCCCCAAGACCTTCGCGAGCTATCCCAACTGGACCAAACACCTCACCCGCGCGCACGCCTTCGACAAACACATGATCAAGGAGGTCCGCGAGGCTCGCAAGCGCACCAAGGAAGTCACAGCTAAACCTTCCCCCGTCAAAACGGAGTCCGGCATCGAATCCGCTGGCTCCGAGGTCTCGGATCTCTGTTACGGCTTTATTGAATCCGACGATAGCGCCGATGAGAGGTATGGAACTGTTAAGAAGATTAAACGAGAAATCAACCTGGCCATGGATACTGTTGATAAGAGTAACAATGCTAGTGATGTAACTGAACAATTTCCTGTTGGATCTCAATCTATCACAGACACAGTGAACGCTGTGATCGACCGAATCGATGAAGACCTGGATTTGATGACCCCAGCCGATTTGCAGGATGTAGATTTGAATGACACCACAGATTTTACGGCCGAGTTCAATGAAGCTACAGATTTCAATGTGGACGATTCGAGCGATATAACAGCTATAGTTGAACATATTGACGCGCTAAGTGGGGGTATGGAGATTACTAGTGAGCCGGCCTACATGATGCAGTTTACGGATATGACGCCGGTGGAAAACATCGTGTATTCTGTTCCAGTGTACACGACGCAAGCGCTGCCCGAGCCGCAGTACTACCAGCCGAGCGACGGCGGCGTCCCCCTCGAATACGGTCCTGACTTCACCACACTCGGCTCAGAGGGATTCACCACAGACGCTATCAGCCTTAACGACCACGACCTGCCTCACATCGACCCCCTACTTACAATCAAAGACGAACAGAATGCCAAGATCTTCATGCACAACGTGCAACATCTACAGAGCGACTTGTATGGAGGTGAAAACACTGCGGGCCCGGAGGCGCACGATCAGAACTGGCCGATCTTAACTAAAATGTTCACGCACGACGAAGCGAACGACAACCGATTGTATGTGCTGAATGGTAATATATTTTAG
- Protein Sequence
- MASSIASYIVLSKDLTTGRDVVREVPFENIEINVPKQTAVDMIGGILCCICDSKFGNKKVFESHYKTHNTGEIVYTCVACKKQHSAYQSFRNHCYLQHIVKHKFGCQQCEKSFSKQSALNAHISAIHDFKCGECDEIFSSKRDLQIHKVVHSRKNKEDPPYNCMKCSQVINSIDTCEHHIDEHCEILYPCPICAIVLPTKKEATLHLTIHFDEKITPDMVKPSCTVEDSSLDTLGGILCCHCDTLFKNRSDIDSHFALEHDDKVVVYSCNICEKQYTKYNLFGDHCYFHISKDKFQCEDCNRLFPRLSLLVMHNLAFHSEGAVDKPYRCDSCIYGFNSHYRLLEHKRLVHDELTIKCQVPDCTATFFAPKDLIQHQRAHLSCVENWCRQCGLQFATLAACERHLDVHRRKQYACPVCARLYRERYLMLKHLPKHFESVLHICKICGRSYGARNRLIQHAKTHAEAKKYKCSICSKSFCRPHELEQHERVHTGDKPYQCTACPKTFASYPNWTKHLTRAHAFDKHMIKEVREARKRTKEVTAKPSPVKTESGIESAGSEVSDLCYGFIESDDSADERYGTVKKIKREINLAMDTVDKSNNASDVTEQFPVGSQSITDTVNAVIDRIDEDLDLMTPADLQDVDLNDTTDFTAEFNEATDFNVDDSSDITAIVEHIDALSGGMEITSEPAYMMQFTDMTPVENIVYSVPVYTTQALPEPQYYQPSDGGVPLEYGPDFTTLGSEGFTTDAISLNDHDLPHIDPLLTIKDEQNAKIFMHNVQHLQSDLYGGENTAGPEAHDQNWPILTKMFTHDEANDNRLYVLNGNIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01171803;
- 90% Identity
- iTF_01171803;
- 80% Identity
- -