Basic Information

Insect: Perizoma affinitatum
Gene Symbol: -
Assembly: GCA_961405105.1
Location: OY560188.1:3386204-3390764[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00071 0.046 14.7 1.4 1 23 245 267 245 267 0.98

2 10 0.58 37 5.5 0.1 3 23 292 313 290 313 0.95

3 10 0.0009 0.059 14.3 0.1 2 23 335 356 334 356 0.95

4 10 0.0001 0.0068 17.3 0.3 1 23 360 382 360 382 0.98

5 10 0.0011 0.073 14.0 0.1 1 23 389 412 389 412 0.97

6 10 0.87 57 4.9 0.2 3 23 420 441 418 441 0.91

7 10 0.00068 0.044 14.7 1.9 1 23 447 470 447 470 0.96

8 10 0.00021 0.013 16.3 1.8 1 23 476 498 476 498 0.98

9 10 1.5e-06 9.6e-05 23.1 1.3 1 23 504 526 504 526 0.99

10 10 0.00015 0.0095 16.8 6.5 1 23 532 554 532 555 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00071	0.046	14.7	1.4	1	23	245	267	245	267	0.98
2	10	0.58	37	5.5	0.1	3	23	292	313	290	313	0.95
3	10	0.0009	0.059	14.3	0.1	2	23	335	356	334	356	0.95
4	10	0.0001	0.0068	17.3	0.3	1	23	360	382	360	382	0.98
5	10	0.0011	0.073	14.0	0.1	1	23	389	412	389	412	0.97
6	10	0.87	57	4.9	0.2	3	23	420	441	418	441	0.91
7	10	0.00068	0.044	14.7	1.9	1	23	447	470	447	470	0.96
8	10	0.00021	0.013	16.3	1.8	1	23	476	498	476	498	0.98
9	10	1.5e-06	9.6e-05	23.1	1.3	1	23	504	526	504	526	0.99
10	10	0.00015	0.0095	16.8	6.5	1	23	532	554	532	555	0.96

Sequence Information

Coding Sequence: ATGGCGGCTCCACCAGCTCCAGGGAATACCCGAGGTCCTATAGTAGACCCGGGGTTGTGTCGCTGCTGCAGATCTATCAAGAAATGTCGACTTCTTACTGCGGAATACGAATGGACGGGACAGAAAGAGATTTATTCTGATATGTTTATGGACTGTTTTGGCCTTCTGCTGTCTAACCTGGAGGGAGATGCGAAAGAGTGCTGTATTTGTGCGACATGTGTGGTGCGGCTTCGTGATGCATGTGCCTTCCGCAGCCAAGTGTTGCGCTGCGAGCAAGCACTGCTCAGCCTGGTGCAGTCTAAAGAAGaggACAAGAAGATATGGCAAGTGGACGTAAAGATGGAGCCACTCTGCGAGTCCGATGCGCCCGCAGACGCGCCAGACATCTCGGCTGATGGAACCGACACTGATTATGAGCCAGACAAAAAGTTGAAAACGAAGCTTAAAACGGAGAagaaaactttgaaaaagaCGCGACAGAAGGTTATTAAAAAGCCTTCAGCGAAAGGGACGAAGACCCAACTTCTCACTAACATGAACAGGCTTCAGGCGAAACTGGACGCGTTGGCCGATCGCGACATTTATGCAGCAGAAGACCAGACAGATAAAAAAGTCACCTCCACAGCGAAACGGAAAAAAGACACGCTCGACCATGACGACATGATATTCAAGAACACAGTCACAATCGTACATAATTCGTACATCTGTCCGTTCGTCACTCGAATCAGCATGTACTACTGTTACTATTGCAAAGATCAATTCACGAATCCGAGCGAGCTCAGGGAACACACGCTATCACACGATCCCAAGCATAAAttcgaaaacatgatcgaataCAACAAAATGCCGAAAATGGACATCACCAGGATAGATTGTCGATTGTGTCCGGAGAGAATCGATACCGTCGAAAGCTTCAAGTCTCACATCACTACTGTCCACGGGAAAACTCTGTACCCAGTCGAGAATGAGTTCATTAAATTCAAATTGACCATGAACAATTTGAAATGCACAGAATGCGAAGCAACATTCCCATACATAGATTCGTTAGTGAAACATATGATTGATCATTTCGGTACGTTCGTATGCGATCTGTGTGGCGCGTGCTTTATTGTGCTGGCATCTTTACGCAGCCATATAAAGAACCACACCAAGGTAGACTTGAACTTTCCCTGCGAGATATGCGGGAAGAATCTTAAATCTAAATACAGCCGAGTTTTGCATATAGCGACAGTGCACGAGAAGAAAGCTACAATTAACTGTTATAAATGCGAGGCGACGTTCATGTCGTACGCGTTGCGAACGAAGCATTTGATTGAAGTGCACGGTGATAAAAGAACGTTTCCATGCAAGTTTTGCGACAAGGTATATAATAGAAGAAAGACGCTCGGCGAGCATAACAGGAGAAATCATCTCAAAGTGTTCAGGCATAAGTGTGATTTATGCGATCAGAAATTCTATCTGCCGTCAAGaTTGAAGGAGCACATGGCCACCCATACCGGTGAACGGAACTTTAGATGTGAATTCTGTGACAAGAGTTACCCACGGCTGCAGTCCCTGCAGGAGCACATGAGATCTCACAGCAATGAACGTAGGTTCAAGTGCGATATGTGCAGCGCTCACTTCACGCACAGCGGCAGTCTGAAGATACATATGAAGAGCCATCATCAGTACGATTTGGATGCTACTTTTAGCTGA
Protein Sequence: MAAPPAPGNTRGPIVDPGLCRCCRSIKKCRLLTAEYEWTGQKEIYSDMFMDCFGLLLSNLEGDAKECCICATCVVRLRDACAFRSQVLRCEQALLSLVQSKEEDKKIWQVDVKMEPLCESDAPADAPDISADGTDTDYEPDKKLKTKLKTEKKTLKKTRQKVIKKPSAKGTKTQLLTNMNRLQAKLDALADRDIYAAEDQTDKKVTSTAKRKKDTLDHDDMIFKNTVTIVHNSYICPFVTRISMYYCYYCKDQFTNPSELREHTLSHDPKHKFENMIEYNKMPKMDITRIDCRLCPERIDTVESFKSHITTVHGKTLYPVENEFIKFKLTMNNLKCTECEATFPYIDSLVKHMIDHFGTFVCDLCGACFIVLASLRSHIKNHTKVDLNFPCEICGKNLKSKYSRVLHIATVHEKKATINCYKCEATFMSYALRTKHLIEVHGDKRTFPCKFCDKVYNRRKTLGEHNRRNHLKVFRHKCDLCDQKFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHMRSHSNERRFKCDMCSAHFTHSGSLKIHMKSHHQYDLDATFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01171727;
90% Identity: iTF_01171727;
80% Identity: -