Basic Information

Insect: Perizoma affinitatum
Gene Symbol: su(Hw)
Assembly: GCA_961405105.1
Location: OY560205.1:4373722-4381272[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0069 0.45 11.5 3.2 1 23 79 103 79 103 0.97

2 11 0.019 1.2 10.2 0.4 2 23 111 133 110 133 0.94

3 11 7.1e-05 0.0046 17.8 2.4 2 20 139 157 138 159 0.94

4 11 1.7e-07 1.1e-05 26.0 0.8 1 23 169 192 169 192 0.98

5 11 0.11 7.2 7.7 5.8 1 23 198 221 198 221 0.92

6 11 0.0017 0.11 13.5 0.2 1 23 228 250 228 250 0.94

7 11 0.027 1.8 9.7 0.4 1 23 255 277 255 277 0.97

8 11 7.7e-06 0.0005 20.8 3.2 1 23 283 305 283 305 0.99

9 11 0.00024 0.015 16.1 4.3 1 23 308 330 308 330 0.98

10 11 1.7 1.1e+02 4.0 0.2 3 23 338 363 336 363 0.83

11 11 0.00045 0.029 15.3 2.2 1 23 370 392 370 392 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0069	0.45	11.5	3.2	1	23	79	103	79	103	0.97
2	11	0.019	1.2	10.2	0.4	2	23	111	133	110	133	0.94
3	11	7.1e-05	0.0046	17.8	2.4	2	20	139	157	138	159	0.94
4	11	1.7e-07	1.1e-05	26.0	0.8	1	23	169	192	169	192	0.98
5	11	0.11	7.2	7.7	5.8	1	23	198	221	198	221	0.92
6	11	0.0017	0.11	13.5	0.2	1	23	228	250	228	250	0.94
7	11	0.027	1.8	9.7	0.4	1	23	255	277	255	277	0.97
8	11	7.7e-06	0.0005	20.8	3.2	1	23	283	305	283	305	0.99
9	11	0.00024	0.015	16.1	4.3	1	23	308	330	308	330	0.98
10	11	1.7	1.1e+02	4.0	0.2	3	23	338	363	336	363	0.83
11	11	0.00045	0.029	15.3	2.2	1	23	370	392	370	392	0.98

Sequence Information

Coding Sequence: ATGCCACCTAAAAAAAGAGGACGGCCTCCAGCTCCAGGATTAGCGAAGCACAAcgcaaaacaaagaaaacaaactcTAAAGGAAAAGTTGATGATTTTAGTTGGAAGCGATGATATAGAGGATAACACCATCAAAGAGGAGAGCTTAAGCAATGATGATAGCGGTAACTTTACAAACGGAGGTGATACTTATACCcaaagtgaaataatttttactgtaaataaatCCAAGGTTTATACTTGCAAGGTGtgccaaaataaaaacttcaagttgaaagaaaactttaaaaaacatcttTTGAAGGAACATTCTACGGTTGTTGGGTGTCTCCCTTGCAAACACTGTAATGTGGTCTGTCCTGATGAGGAGACATTACTTGAACATATTGTGAAAGCTCATGAAAATCCTGTCATCAAATGTCAACATTGCTCCAAACAATTCACTAGACAGTCCCATGTCTTACGACATATGGCACAGAAAGGCTGTGGGAAAAAAATGGCAAAGTTCCCGTgtgaaatatGCCATGCAAGTTTTTCTAGAAAAGACAACTTGATTGTACATCTTCGTACAACCCACCTGAGGAGCAACAGGTTTATGTGTAAATACTGTCAGTTTTCCACCAAAAACTTTACCAAACTTACTAGACACTGGCATGAAAAGCATGCAGagAAACCTAATCAGTTCATTTGTGACCTTTGTGGGAAAACAACCTCGTCACGTGCAGCCATGTCCAAACACAATGAGATACACGGAGAGAAGAAATATGCTTGTGATGTGTGCGGTTACAGCACGCACACGGTGGAGGTGATGCGGCGGCACGTGCTGACCCACGTGGCAGACAAGCCGTACAAATGCAACATCTGCAAGCACTCCTACATCCAGCGCTCGCAGCTGCTGCGCCATCTCGAGACGCACAGCGGGTTCGTTTGCTTCCACTGCAACAAGCGATTCCCGAACAAAGTCAGccTAATGTCCCACAACAAGAAGCACAAAGGAGAGATAAAGCTATTCTGCCCGTACAGCGAGTGTCAATACGCCAAAAAGGAGTTCAATACTGAAGCCAGTTATGACGAACATTTGAAAACGCACAGCAAAGACGAGAAATTGTTTTCGTGCGAGGTTTGCCGCAAGCAGTTCATGAGCGAGCAGTACATGCGGCGGCACATGAGCACGCACACGCTGGACCGTCCGCGGCGCTGCATGTACTGCGTGTCGGCACGTGCCTACATCCGCGGCATGCACCTCGTGCGGCATGTGCGTCACTTCCACGCCGACGTGTTCCGCTCGCACCTCACGCACGTGCGCAGCGTGCTCAATAACCCTAAAAACCAGAATCTTCAAGAGAAACGTGTCACAAAATCGGAGCTGGAGTCGATTCTGAACGTGCTGGACGCGGAGGCAGACCGCATCCTCGAGGGCTGCAGCGAGAACGGGCCCGTGCTCTACGGCGGTATGCAGGACAGCGACGAAGCGCTGCCCTCCGCCAATGATGAAGACTTTGACGAAGAAGAGCGTGAGATCAGCCCTCTGATGACGGAGGAGACGCTCGCGGAGCACCTGTCCAAGCTGCTGGAGCAGCTGATCGACTCGGAGACCCTGGAGTGCTTCGGCTGGCCGCACGAGACCGTCGATGTGGTGCTAGAGAAGGTGATAAAGGAATGTGGCGTGAAGCCGGCGGACCGCGTAACCTGGACGCGCGTTCAGCGCCTCCGGGAGAACGCCAAGCACCTGTTCATACACGTGGTCGACGACAAGAACGTCGCCAACATGCTGGACACGCACACCATCGACCAGATCGTCAAGCATATCCTCAATCAGTTCGCGCCCGACCGTATACACGAAAAATGCACGGAGGAACTGTTTtag
Protein Sequence: MPPKKRGRPPAPGLAKHNAKQRKQTLKEKLMILVGSDDIEDNTIKEESLSNDDSGNFTNGGDTYTQSEIIFTVNKSKVYTCKVCQNKNFKLKENFKKHLLKEHSTVVGCLPCKHCNVVCPDEETLLEHIVKAHENPVIKCQHCSKQFTRQSHVLRHMAQKGCGKKMAKFPCEICHASFSRKDNLIVHLRTTHLRSNRFMCKYCQFSTKNFTKLTRHWHEKHAEKPNQFICDLCGKTTSSRAAMSKHNEIHGEKKYACDVCGYSTHTVEVMRRHVLTHVADKPYKCNICKHSYIQRSQLLRHLETHSGFVCFHCNKRFPNKVSLMSHNKKHKGEIKLFCPYSECQYAKKEFNTEASYDEHLKTHSKDEKLFSCEVCRKQFMSEQYMRRHMSTHTLDRPRRCMYCVSARAYIRGMHLVRHVRHFHADVFRSHLTHVRSVLNNPKNQNLQEKRVTKSELESILNVLDAEADRILEGCSENGPVLYGGMQDSDEALPSANDEDFDEEEREISPLMTEETLAEHLSKLLEQLIDSETLECFGWPHETVDVVLEKVIKECGVKPADRVTWTRVQRLRENAKHLFIHVVDDKNVANMLDTHTIDQIVKHILNQFAPDRIHEKCTEELF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01171746; iTF_00811373;
90% Identity: iTF_01171746;
80% Identity: -