Paff006969.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma affinitatum
Gene Symbol
-
Assembly
GCA_961405105.1
Location
OY560190.1:6022783-6027145[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.021 1.4 10.0 4.8 1 23 155 178 155 178 0.95
2 16 0.00013 0.0081 17.0 1.0 1 23 187 210 187 210 0.96
3 16 0.018 1.1 10.3 0.6 2 23 223 245 223 245 0.97
4 16 0.0015 0.1 13.6 1.1 3 23 256 277 254 277 0.96
5 16 0.0004 0.026 15.4 0.7 2 23 290 312 289 312 0.96
6 16 4.8e-06 0.00031 21.5 1.0 2 23 340 362 339 362 0.96
7 16 9.3e-05 0.0061 17.4 1.1 2 23 372 394 371 394 0.96
8 16 0.11 7 7.8 1.0 3 19 400 416 398 418 0.94
9 16 0.0004 0.026 15.4 0.6 2 21 424 443 423 446 0.94
10 16 0.0011 0.07 14.1 0.8 3 23 456 477 455 477 0.96
11 16 0.0009 0.058 14.3 2.6 1 23 482 505 482 505 0.95
12 16 0.016 1.1 10.4 5.0 1 23 518 541 518 541 0.91
13 16 2.2 1.4e+02 3.7 1.0 1 23 560 583 560 584 0.89
14 16 0.031 2 9.5 2.2 2 23 616 637 615 637 0.97
15 16 0.0052 0.34 11.9 0.4 1 23 703 725 703 725 0.97
16 16 0.21 13 6.9 2.0 1 23 731 754 731 754 0.96

Sequence Information

Coding Sequence
ATGTCGCTTATAACGGAAACTGACATAAAAGTGGAAAAAGATGACCGAAAAGACCCCATGTCTTTCCTGCCACAAGAAGAGATGTCTTACGAgataaagaagaagaaaaagaagaaaaaaaagaaaaagctcGAAGACCCTTTCAAAGATGTGGAGAAGTTATCGGTGATACGGGAACCGGATATAACTGCTTTGGATCCTGATATTGGGAGTTTGGATCCCGAAGTGACAATTAAGGTTGAGGATATTGAAGTGGATTTGAATATTGATGatTTCAACAATGATGATGGACTCGTCATGGAATCCTATAACGAAGACTGTCATCTAGAGCCAATCGTGAAACTCGAAGAGCAAAGCCGAGATGCTGTCCTCTTAACCTTTGAGAACATCATCAGCAACAACCTCATAAGCGATAAACTTCTAAAGGAAGATAAAATTAAGATCGAACCGCCCGGCGAGAACCATTTCTGCCAAGTCTGCCATCTAGTCTTCAGAACAGCCAAAACCTTAGACTTGCACAGAAAACGATCGCACAAAAGTTTCAGGAAGTCTTTCAAACATATATGTAATGAATGCGGGAGAGAATACGAGTTTAAGAATAGTCTGGTCGCGCATATTCGCAGAAAACACGGCCCCAATGCGAATAATGACGATATGCTGGAACGAACCTGCGAGTTATGTGCACTAGTCTTTAAAGGTATATCTAGGCTACGTATGCATATGCGAAGAAAGCATGGATCTCATGAGGACACGTTTAAACTAGCATGCGAATACTGCGGTCTGACTTACGACAAACAATGCAGCCTGCTTGTACATGTACGCagaaaacatacacacaaaacgAAAACCAAATCTAATCTGTGGCTGACCTGCCCATTCTGTGCGAAGGTCTTCAACAAAAGGGAAACTTACGCACGACATATTCAAAGAAACCATCGAGTTAAGGATGATGATGAAAAGACTCGGGAAGATGAGACGTTTAAAAAGACTCATATGAATGAAAAAACTGGTGAACTCACCTGCAATCAGTGTCCAGCTAGTTTCTCATCAACCAGCTATCTTAAATGGCACATGAGGAGAAAGCATAATGCTATGATTGCAGACTTCAGACTTaaatgtatgatctgtaaaCTGTCATATGCAAATTCTGAAAGCTTAAAGCGGCATGTCAGAAGGAAACATGATCAAGGTACCTTCTGTTATGAATGTAATAAACAGTTTGCAGATAGAGATATGTACTTAAACCATTCACACGCTAAAGATGTCCAAACGTGTAATATATGTGGACTGATTTTCGCAAATCAAGGCGGTTTGGCTAAGCATTTAAGGTGCACTCATAAAATAGACAGTCCTAAGACTGTTTTCTGTCCGAATTGCAACCAAGGATTTATTAACAAACGAGCGTTGAAATCTCATTTTAACAGGGTACATTTAAAACTTACTTACACCTGTCAATTCTGTAGTAAAGTTTTCAAAACAAGAGAAGTTTATAAGAGGCATGTTACCGTCAAACATATTCAGGCCACGAAAGCAGATGACGTTAGCAGATTGCATCAGTGCGAACAGTGTCCGGAGAAATTTAAGGACGAATTCGAACTTTGCAAGCATAATAATTTTAGTCACGGCGAAGTAAAACTTGTGGTCGTTAAGAAGGAAGAGGATGATATTAAAAACGTTTTCAAATGTACAAAATGTATAGATGAATATTCCAGTTGGGAGCTGTTGAGAGTACATTTTGAGCAAGCGCATCATTTGACAGAGGAAGTACAATGCCAGATCTGCGGTGACTTAATGAGTCGAGGGGATTTAGTCAAACACATTAAGGTACATGATGAAATTGAAGTACAATGCAAATATTGCGAGTTTAAAAGCAAAAACCGACTTAGTATGACCCAACATATGCTTCGGCACAAAAATGCAGAAACCTTCCACTGTGATTATCAAAATTGTAGATACAAATCGTTTTACGAGCATGCAATGACTAAACACAAGAAGAGACATCTAGAGTTAGGTGTTAAGTTGCAGTGTGCGCGTTGCCCGTTCCAaacaatgaataaatacattttgaaataccACGAAGAAGCTCACGAGACAGGGAAAAAACGTTACAAATGTGATAAATGTGATTATGCCACGATACTGCCAGCTAATTTAGTGCAACATAAGTTTAAACATTCCACAGAGAAGAAATTTAAATGTGAAGTCTGTCCATTCGCAACTAAGTATAACACATCCTTGCGTTTTCATGTTAAGAAAAAGCATTGTGACCTACCTACTGTTAGTTAG
Protein Sequence
MSLITETDIKVEKDDRKDPMSFLPQEEMSYEIKKKKKKKKKKKLEDPFKDVEKLSVIREPDITALDPDIGSLDPEVTIKVEDIEVDLNIDDFNNDDGLVMESYNEDCHLEPIVKLEEQSRDAVLLTFENIISNNLISDKLLKEDKIKIEPPGENHFCQVCHLVFRTAKTLDLHRKRSHKSFRKSFKHICNECGREYEFKNSLVAHIRRKHGPNANNDDMLERTCELCALVFKGISRLRMHMRRKHGSHEDTFKLACEYCGLTYDKQCSLLVHVRRKHTHKTKTKSNLWLTCPFCAKVFNKRETYARHIQRNHRVKDDDEKTREDETFKKTHMNEKTGELTCNQCPASFSSTSYLKWHMRRKHNAMIADFRLKCMICKLSYANSESLKRHVRRKHDQGTFCYECNKQFADRDMYLNHSHAKDVQTCNICGLIFANQGGLAKHLRCTHKIDSPKTVFCPNCNQGFINKRALKSHFNRVHLKLTYTCQFCSKVFKTREVYKRHVTVKHIQATKADDVSRLHQCEQCPEKFKDEFELCKHNNFSHGEVKLVVVKKEEDDIKNVFKCTKCIDEYSSWELLRVHFEQAHHLTEEVQCQICGDLMSRGDLVKHIKVHDEIEVQCKYCEFKSKNRLSMTQHMLRHKNAETFHCDYQNCRYKSFYEHAMTKHKKRHLELGVKLQCARCPFQTMNKYILKYHEEAHETGKKRYKCDKCDYATILPANLVQHKFKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPTVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01100022;
90% Identity
iTF_01171724;
80% Identity
-