Basic Information

Insect: Perizoma affinitatum
Gene Symbol: PRDM7
Assembly: GCA_961405105.1
Location: OY560187.1:3148651-3156836[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0014 0.088 13.8 1.6 1 23 316 338 316 338 0.96

2 11 0.0012 0.08 13.9 3.2 1 19 344 362 344 365 0.94

3 11 1.4e-07 8.9e-06 26.3 0.8 2 23 374 395 373 395 0.97

4 11 0.00027 0.018 16.0 0.3 1 23 412 434 412 434 0.97

5 11 9.7e-05 0.0063 17.4 0.7 1 23 440 462 440 462 0.97

6 11 0.0006 0.039 14.9 0.8 1 23 468 490 468 490 0.97

7 11 0.0075 0.48 11.4 0.3 1 23 496 518 496 518 0.97

8 11 0.0075 0.48 11.4 0.3 1 23 524 546 524 546 0.97

9 11 0.0078 0.51 11.4 0.3 1 23 552 574 552 574 0.97

10 11 9.6e-05 0.0062 17.4 0.9 1 23 580 602 580 602 0.97

11 11 0.0013 0.082 13.9 0.2 1 23 608 630 608 630 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0014	0.088	13.8	1.6	1	23	316	338	316	338	0.96
2	11	0.0012	0.08	13.9	3.2	1	19	344	362	344	365	0.94
3	11	1.4e-07	8.9e-06	26.3	0.8	2	23	374	395	373	395	0.97
4	11	0.00027	0.018	16.0	0.3	1	23	412	434	412	434	0.97
5	11	9.7e-05	0.0063	17.4	0.7	1	23	440	462	440	462	0.97
6	11	0.0006	0.039	14.9	0.8	1	23	468	490	468	490	0.97
7	11	0.0075	0.48	11.4	0.3	1	23	496	518	496	518	0.97
8	11	0.0075	0.48	11.4	0.3	1	23	524	546	524	546	0.97
9	11	0.0078	0.51	11.4	0.3	1	23	552	574	552	574	0.97
10	11	9.6e-05	0.0062	17.4	0.9	1	23	580	602	580	602	0.97
11	11	0.0013	0.082	13.9	0.2	1	23	608	630	608	630	0.97

Sequence Information

Coding Sequence: ATGAGCCAGCGCCTGCTACGCAAAAAACCCCGAATAAGTTACTTCGAACCCGATGAGCCGGATTTGGACGAATATatctATTGTGATAAATGCGGAGATCTCGTCTACGAATACTGCTCCATTCATGGACCCCTACTCGTCGTACCAGATAATAAAATTCCCGCCAAACCCAACGTCCCATCGTTCGTACCTCGAGCCGCGCTCACCGTCCCCAACGTGTTCCTGCACATAGCCCCTTCCAGTATACCAGGggctggtctgggtgttttcgcgACACTGACGCTGCCTAGTGGGGTGCGTTTCGGTCCATACACCGGAGAACGCACCAACGGCGTCGACTCCTACTACTGCTGGCAGATATACGACACCAATCGCAAGCCAGTTCACTGCATTGACGCCGTAGACGCGAACAAGTCCAACTGGATGCGATACGTGAACTGCGCTCGGCACTGGAGCGAGCAGAATCTAGTTGCATTCCAGTACCAAGGGCAACTCTACTACAGAACAATACGGATAATCCCTCGTTTCACGGAGCTACTGGTGTTCTACGGCAGCGAGTTCGCTAACGAATTGGACATCGATCTCGGCAGATACAACGCGTCGCGATACGCACGTCTATACGgTGCCCCGCTGAACAAGAAACACAAACCAACCGATGAAAACTTGATGATAGCTCAAGAACAAGAATTTGATCCTCCGAAAGCAGTTCCAAATGATTTTGATTCTACTTCGAAAGATATTAAATATTCAGAGATTGTTATGGAGGAAATAGagataaaaaatagaaaagacGATGAATCGTCAAGCGATAAAAATATGCGACAAGTAACTAGAAGTAACAATGACTCAATTGCAAACTTAACTCAAGATGCAGAAAACAACGCCGACAATATTGCTGATAATTCTAAGACATCAGTCAATCGTTGCCAACAGAAAGACATGTATTATTACTGTGGCGTTTGCAACGAAAAGTATAAAATCAAGCATGACTTAGAAAAACACATAATATTTCATGACCAAACACGGGCTTATGCTTGTGAAGTCTGCGATCACAGATTTATCACGTCAGATCATTTGAAAAATCATAACTGTAACTTTTACCGAGTAATAAACGCAATCCCATGTGAAATATGTGATAAAACATTCAATGAAAAATCTTCATTGAAAAGACATTTGAAAACTCACATGGGAAACATGCAAAGACATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGACACATGTAATGCGAAATTTGCTCGGATTGGTGCATTGCAAAGTCATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGACACATGTAATGCGAAATTTGCCCGGATTAGTACTTTGAAAATACATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGACACATGTAATGCGAAATTTGCTCATATTGGTGCTTTGCAAAGTCATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGACACATGTAATGCGAAATTTGCTTGGAGTGGTGCGTTGAAAAGTCATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGACACATGTAATGCGAAATTTGCTTGGAGTGGTGCGTTGAAAAGTCATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGACACATGTAATGCGAAATTTGCTTGGAATGGTGCGTTGAAAAGTCATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGACACATGTAATGCGAAATTTGCTCGGATAAGTACTTTGCAAAGTCATAAGCGAACTCACACAGGAGAAAAACCATTTGCTTGCGATACATGTAATGCGAAATTTGCTCAGATTGGTGCTTTGCAAAGTCATAAACAAACTCACACTGGACAGAAGTAA
Protein Sequence: MSQRLLRKKPRISYFEPDEPDLDEYIYCDKCGDLVYEYCSIHGPLLVVPDNKIPAKPNVPSFVPRAALTVPNVFLHIAPSSIPGAGLGVFATLTLPSGVRFGPYTGERTNGVDSYYCWQIYDTNRKPVHCIDAVDANKSNWMRYVNCARHWSEQNLVAFQYQGQLYYRTIRIIPRFTELLVFYGSEFANELDIDLGRYNASRYARLYGAPLNKKHKPTDENLMIAQEQEFDPPKAVPNDFDSTSKDIKYSEIVMEEIEIKNRKDDESSSDKNMRQVTRSNNDSIANLTQDAENNADNIADNSKTSVNRCQQKDMYYYCGVCNEKYKIKHDLEKHIIFHDQTRAYACEVCDHRFITSDHLKNHNCNFYRVINAIPCEICDKTFNEKSSLKRHLKTHMGNMQRHKRTHTGEKPFACDTCNAKFARIGALQSHKRTHTGEKPFACDTCNAKFARISTLKIHKRTHTGEKPFACDTCNAKFAHIGALQSHKRTHTGEKPFACDTCNAKFAWSGALKSHKRTHTGEKPFACDTCNAKFAWSGALKSHKRTHTGEKPFACDTCNAKFAWNGALKSHKRTHTGEKPFACDTCNAKFARISTLQSHKRTHTGEKPFACDTCNAKFAQIGALQSHKQTHTGQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -