Paff004721.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560188.1:3128569-3135530[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.5 98 4.2 0.8 3 23 2 23 1 23 0.89 2 21 0.052 3.4 8.8 0.6 2 23 48 70 47 70 0.93 3 21 0.0053 0.34 11.9 0.3 1 23 92 114 92 114 0.98 4 21 0.0007 0.045 14.7 1.2 2 21 119 138 118 139 0.92 5 21 0.066 4.3 8.5 0.1 2 23 221 243 220 243 0.93 6 21 0.0037 0.24 12.4 0.4 2 23 271 292 270 292 0.96 7 21 0.00014 0.009 16.9 0.4 1 23 296 319 296 319 0.95 8 21 0.013 0.82 10.7 0.5 1 22 323 344 323 344 0.93 9 21 0.0043 0.28 12.2 0.9 1 23 351 374 351 374 0.95 10 21 0.028 1.8 9.6 0.5 1 23 381 404 381 404 0.94 11 21 0.046 3 9.0 1.5 2 23 410 431 409 431 0.93 12 21 3.2e-06 0.00021 22.0 1.3 1 20 437 456 437 459 0.94 13 21 0.09 5.9 8.0 0.2 2 23 562 584 561 584 0.93 14 21 0.21 14 6.8 0.3 3 23 610 630 608 630 0.94 15 21 0.00066 0.043 14.8 0.3 1 23 634 657 634 657 0.95 16 21 0.0016 0.1 13.5 1.5 1 23 661 685 661 685 0.93 17 21 0.12 7.6 7.7 0.7 3 23 691 714 689 714 0.90 18 21 2.9e-05 0.0019 19.0 0.7 1 23 721 744 721 744 0.98 19 21 0.014 0.94 10.5 1.1 2 22 750 770 749 771 0.80 20 21 0.52 34 5.6 3.3 1 20 777 796 777 799 0.94 21 21 0.0053 0.34 11.9 5.0 1 23 805 828 805 828 0.98
Sequence Information
- Coding Sequence
- ATGTGCGTATTTTGCTGCGAGAGCTTCTCAGAAGCAGTACTGTTCAGGCGACACATGGTCGAAGAACATAAGGACTTTAAAATACACATCGCATTTGCACATCTTTCGGAAGGATACCTTAAAGTCGACATCACAGATTTATGCTGCCGAATCTGCTCTTCGCCTTTCACCAGTCTTGATGAGCTAGCCCTACATTTGACTAAAGTTCATTCCAAAAAGATTGATCTTGATGTCGATGTGGGATTACAGCCTTTTCGCTTGGAAAATGATAAATTTATTTGCCCGATATGTGAGCAAAAGGCTGCTAACCTCTGCGCTTTGAGTAGACACATTCAGAAACATTATCGGCTTTGCATATGCGAGCATTGTGGGAAAGCGTATGCTACGAACACGTCTTTGACATATCATGTAAAGAACTCGTGTACGAAGGATGGGCAAAGGCGGTGCAGGAAATGTAGAGTAGTTTGTTCGACACTGTATCCGTTCAGGTTGCAAGGCAAACATTTGATTTGCGTTTACTGCTGCGACCGATTTGAAGACCCGGATGAATACAGATGTCATATGGATGAGATGCACAAGACGGTCGATCTTTACACAGCTTTTGCCCACACTGGCAAAAGTAGAGGTAGAGACTACCTAAAGGTTGACTGCGTTAATTTAAAATGCAAATTGTGTAAGGAGCCTTTCGATACTGTCGCTGAAGTAGCTCAACATCTTAAGGATAGACATGATGAATATTCCAATATAAAAGATATGAACTTAAAATGGGAGGTGGGCTTGCACCCGTACcgattaatcaaaaataaatgggTCTGTATGGTGTGCAATATGAAACTGCCGACCTTGACTAAGCTAACACGACATATGTCCACCCATTACGCGGACTATGTTTGCGATATCTGTGGCAGGAGCTACATGAACATAGATAATTTGAAATACCACGTCAAGTTTAGCCACTCTGACAAATATCTCTGTAGAAAGTGTAAAAAAGAATTCGCCACTCCGGAAGAACGAAAGGAGCACCTAAAAACATCGAAGAAGTGCAGACCCTTTGCTTGCGTTCATTGCGGGGAGAGATTCTTTTCGTGGGAGCAAAAGCAGGTACATTTAATTAGCAAACACAATGTCCAGGCAGCGACGTACCCGTGTCCGGATTGTGTGATTGTTTTCAACTCAAGAAAACGCTTCTACGACCACTATACTATAACACACTCTGATCTGGCACTCCAGTGCTCATGTTGTGAAAAAAAGTTTAGAAATAAGGGACTGCTCGATGATCATTTGGTCATACACACAGGTGAAAAGCAGTTTCAGTGCACGATCTGTTCCAAGACGTTTACTAGAAATAAGGCCTTACAGCAACACATGTGGATGCACAGTGAAACTAAACGCGAATCCGACAAGGACGCCGACGCACTGCTGCGAGGCTCCTCCCATGGTATGCCGGTAAAATCCGCTCGTGTAATGGCGAAACGGAATGCTGAAGTTGTGTTACAGTATTCCACACTGTATCCGTTCAGGTTGCGAGGCAAAATCTTGATGTGCGTTTACTGCTGCGAAGAAATCGAAGACCCAGAAGAGTTTAGACACCATGTGGATGAGATGCACAAGTGTGTTGATATTGAAACAGCTTTCTTTCACCTAAAACAATTATACTATCTTAAGGTCGACTGTGTTAATTTGAAATGCAGATTATGCAGGGAACCTTTCATTACGGTCTCTGAAATGGCTCAGCATTTAATGGATCgacatgataaaataaaagacaTGGACTTGAACTATGACGTGGGCTTGCAACCCTATCGATTGATTAAAGACAATTTATTCTGCCTCATATGCAATATAAAACAGCCGAACTTGAATTCACTTGCAAGGCACATGTCCACGCACTATATAAACTACGCTTGCAATGCTTGCGATAAAAGCTACATGTCAAAGGAAGGCTTAAAAGCGCATGTCCGGTTCAATCATTCAGCTAAATACATTTGTAGGAAGTGTAAGAAGGTGTTCCCTACgtcagaagaaaaaaaagagcACCTCAAAACATCAACGCACTGCTGGGGCATCATGTGCAGTCATGACGGTTGCACCGAAAGATTCGCCTCTTGGGATAGTAAGCAGAAACATTTAGTCAGCAACCACAACGGCCAGCCTCTATCGTACCGATGTCCCGATTGTGAGATCGCATTTGAATCCAGATCTCAGTTCTACCAACACTATAATACTTTGCACTCTGAACTAGCAGTTATGTGCTCCTATTGCGGAAAGAAGTTTAAAAGTAAGAGGGAGCATGATATTCATCTGGTTATACATACCGGTGAAAAACCATTTAAGTGCACTGCTTGTTCTAAGGCGTACTCTTGTAAAAAAAGCTTACGAGATCACATGTGGTCGCACAGCGAAACAAAGAGATACCCATGCAAGATTTGCAATGCGGCATTCTGCAAGAAAGTGAGCTTTGATTCGCACATGAAAAAGTGTCATCTTTAA
- Protein Sequence
- MCVFCCESFSEAVLFRRHMVEEHKDFKIHIAFAHLSEGYLKVDITDLCCRICSSPFTSLDELALHLTKVHSKKIDLDVDVGLQPFRLENDKFICPICEQKAANLCALSRHIQKHYRLCICEHCGKAYATNTSLTYHVKNSCTKDGQRRCRKCRVVCSTLYPFRLQGKHLICVYCCDRFEDPDEYRCHMDEMHKTVDLYTAFAHTGKSRGRDYLKVDCVNLKCKLCKEPFDTVAEVAQHLKDRHDEYSNIKDMNLKWEVGLHPYRLIKNKWVCMVCNMKLPTLTKLTRHMSTHYADYVCDICGRSYMNIDNLKYHVKFSHSDKYLCRKCKKEFATPEERKEHLKTSKKCRPFACVHCGERFFSWEQKQVHLISKHNVQAATYPCPDCVIVFNSRKRFYDHYTITHSDLALQCSCCEKKFRNKGLLDDHLVIHTGEKQFQCTICSKTFTRNKALQQHMWMHSETKRESDKDADALLRGSSHGMPVKSARVMAKRNAEVVLQYSTLYPFRLRGKILMCVYCCEEIEDPEEFRHHVDEMHKCVDIETAFFHLKQLYYLKVDCVNLKCRLCREPFITVSEMAQHLMDRHDKIKDMDLNYDVGLQPYRLIKDNLFCLICNIKQPNLNSLARHMSTHYINYACNACDKSYMSKEGLKAHVRFNHSAKYICRKCKKVFPTSEEKKEHLKTSTHCWGIMCSHDGCTERFASWDSKQKHLVSNHNGQPLSYRCPDCEIAFESRSQFYQHYNTLHSELAVMCSYCGKKFKSKREHDIHLVIHTGEKPFKCTACSKAYSCKKSLRDHMWSHSETKRYPCKICNAAFCKKVSFDSHMKKCHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -