Basic Information

Insect: Perizoma affinitatum
Gene Symbol: -
Assembly: GCA_961405105.1
Location: OY560202.1:10739338-10753784[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0038 0.24 12.4 0.8 1 23 347 369 347 369 0.96

2 12 0.0019 0.12 13.3 0.3 2 23 377 398 376 398 0.94

3 12 0.03 1.9 9.5 0.8 1 23 402 424 402 424 0.97

4 12 0.00051 0.033 15.1 0.5 1 23 429 452 429 452 0.98

5 12 0.00066 0.043 14.7 0.3 1 23 456 479 456 479 0.94

6 12 0.63 41 5.4 0.2 2 21 497 516 497 521 0.90

7 12 0.00011 0.007 17.2 0.9 3 23 531 552 531 552 0.98

8 12 0.26 17 6.6 0.7 2 23 572 594 572 594 0.97

9 12 6.8e-06 0.00044 21.0 0.5 1 23 605 627 605 627 0.99

10 12 7.3e-07 4.7e-05 24.1 1.3 1 23 633 655 633 655 0.99

11 12 0.0028 0.18 12.8 2.0 1 23 661 683 661 683 0.98

12 12 2.6e-05 0.0017 19.2 0.4 1 23 689 712 689 712 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0038	0.24	12.4	0.8	1	23	347	369	347	369	0.96
2	12	0.0019	0.12	13.3	0.3	2	23	377	398	376	398	0.94
3	12	0.03	1.9	9.5	0.8	1	23	402	424	402	424	0.97
4	12	0.00051	0.033	15.1	0.5	1	23	429	452	429	452	0.98
5	12	0.00066	0.043	14.7	0.3	1	23	456	479	456	479	0.94
6	12	0.63	41	5.4	0.2	2	21	497	516	497	521	0.90
7	12	0.00011	0.007	17.2	0.9	3	23	531	552	531	552	0.98
8	12	0.26	17	6.6	0.7	2	23	572	594	572	594	0.97
9	12	6.8e-06	0.00044	21.0	0.5	1	23	605	627	605	627	0.99
10	12	7.3e-07	4.7e-05	24.1	1.3	1	23	633	655	633	655	0.99
11	12	0.0028	0.18	12.8	2.0	1	23	661	683	661	683	0.98
12	12	2.6e-05	0.0017	19.2	0.4	1	23	689	712	689	712	0.98

Sequence Information

Coding Sequence: atgaataattttctGTCTGAAGATGATGAGCATTTGAGAGTGTGTCGTGTATGCCTCATCAAGGATGTGAAAATGTATGACCTGCAGAGCTACCCCCTAGAAACGTACTTTGAAGCTATTATTGGGATTCCTGTGATAAGTACAATGGACCTGCCACCATACCTTTGTTATGAATGTGCTACGCTGGTTAAGAAGTTCTCGTTCTTCAGGGAGCGCTGTCTCACTGGACAGGCCACTTTGTACGGCATCCTCCAAAGCTCTGgaaagGTCACAGCAaaagaaattaacaaaataGACAGACAAAAGTCCAACCTCTCATCAAAGCTCACAAACCACAGTGTGAATGCCAACACTTTCCACGCTGAGGAAGGGATGACACTGAAAAAGGTTAAAGATGAACGGACcatttttgatgattttgagGTCACCGTGGATTGTATTAAAGAAGAAGATGACTTTCCGATGCTAGATGTAGAATTAAGACATTCTAGTGATGATGAGCCGTTATCAGCTCATAAGGTGGTGAAAGAGAAAAAGAAGAAAGTTAAGAGGAAAGGTCGAAAGAAAAAGGAGACAGCGGCATATGAAGCAGATGTTAAGGATGGCATTGATATAGAAGATGAAGCGGTGGAAATAAAAGAAATAAGCTGCGGTAGTTTAGCGCACACCATAGGGGTGGGGGGGGTTGTCGGTACAATAGCGACCTCTAGCGACGGCGATGCGATGCAGGTTCCGTCATCACCGGCGCGGGCGCACGATATTCATTTAGGAAAGATTGAGCAAACCGAACAAGCGACAGAGCCCGCGGAAGATATGAAAGGTGTGATGACAGAGTTGCCGAAACGCAACAAGAGGGGCCGCCCGCGGAAGAGCGAGCAGCAACCAGCCGCTAAGAACAGGAGAACCAAGAACACGGGCGGAGTTCACATCGAGGATATCAACTTGGACGAATATGTTACAGTCGTCAAGCTAACGTTAGAAGAGCAAATGGAAGAGATAGTTAAACGCAAGGACTCTCTGAACTACCAGAATGCTGCCTTCCAATGCAACCTTTGCTTCAAAGGGTTCATCGACGCGAACGCGTGGAAACACCACGTGGGAAAACATGATCCGaatgCTGGAGACGTCGTGTGCACGGTGTGCAAGTTCATATTCCCCACGAAGCGAGCGTTGCAGAAGCACGCGACCAATCACGAGAAGAAGTATGCCTGCAAGTCCTGCCCTTACGTCTCTAAGACAACAACACAAGCAAAGCAGCATCAAAGATGGCATAAAGGTGTTACGTACACTTGCGAATATTGCGACGAAGTTTCTACAAAGTGGACGTCGTATCTATCGCACGTGCGAATCAAGCATCCGTCTTCGTTCATATGCTCTGTCTGTGGATATTCGTTCGTGAGTCAGCTGGGGCTCACCATGCATAAAACTATGATGCACAAGGATGTCAATGAAGAGAAATGTGAAAGCAACGGCGATGCGCCGGGGCCTTACTGTCAAGATTGTGACGTCAAATTCCTGTCAGTGGAGGCCTACAACCGGCACATGGTCACCTCTATCAAACATTCGCAGAGCGACGActttagTAAAGGCTGCAGAGTGTGCGGCGCCACCTTCTCCAATCCTGAGGAGTTGCGCTTACATCACAGGAAGGAACACGCCAGGAAGAGACCTAAAAACTACGGCAAGAAGCCGGCTGGGCACTCCTGGCCGGCTAAGTGTGAAcatTGTTCGGAGGAGATACCGAACGCGCGCGAATATTGGACTCACTTCCGTCGCGTCCATCCGGACAAGAACTACCCCATACAGAAGAACTATGTCTGTGACGTCTGCGGAAAGAGCTTCCGGGGCAACGCGTTCCTGATCTACCACAAGCGCACGCACAGCTCGGAGCGGCAGTACAAGTGCGGCGAGTGCGGGAAGTCCTTCTTCAACAGAACCAACCTCAGCATGCACGCGCGCACGCACTCCGACTCGCGGCCCTACCCCTGCGACGTCTGCTTCAAGGCGTTCAAGTGTAAAGGCGCACTCGACAGGCATTACCGGAGCCACACGGGCGTGAAGCCATACGAATGCGAAGTCTGCGGCAAATCTTTCGGGCAGTCCAACAGCCGAAAACTGCACGTTAGAACCGTTCACTTGAAGCAACCGGCGCCGTACGTCAGTCGCAGTCGCATCCACAGGCGGAAAACGCAGAAAGAACAGACGCATATCTTTGTCTATCCACCGGACGTTGATACAAACTGCCATGACTAA
Protein Sequence: MNNFLSEDDEHLRVCRVCLIKDVKMYDLQSYPLETYFEAIIGIPVISTMDLPPYLCYECATLVKKFSFFRERCLTGQATLYGILQSSGKVTAKEINKIDRQKSNLSSKLTNHSVNANTFHAEEGMTLKKVKDERTIFDDFEVTVDCIKEEDDFPMLDVELRHSSDDEPLSAHKVVKEKKKKVKRKGRKKKETAAYEADVKDGIDIEDEAVEIKEISCGSLAHTIGVGGVVGTIATSSDGDAMQVPSSPARAHDIHLGKIEQTEQATEPAEDMKGVMTELPKRNKRGRPRKSEQQPAAKNRRTKNTGGVHIEDINLDEYVTVVKLTLEEQMEEIVKRKDSLNYQNAAFQCNLCFKGFIDANAWKHHVGKHDPNAGDVVCTVCKFIFPTKRALQKHATNHEKKYACKSCPYVSKTTTQAKQHQRWHKGVTYTCEYCDEVSTKWTSYLSHVRIKHPSSFICSVCGYSFVSQLGLTMHKTMMHKDVNEEKCESNGDAPGPYCQDCDVKFLSVEAYNRHMVTSIKHSQSDDFSKGCRVCGATFSNPEELRLHHRKEHARKRPKNYGKKPAGHSWPAKCEHCSEEIPNAREYWTHFRRVHPDKNYPIQKNYVCDVCGKSFRGNAFLIYHKRTHSSERQYKCGECGKSFFNRTNLSMHARTHSDSRPYPCDVCFKAFKCKGALDRHYRSHTGVKPYECEVCGKSFGQSNSRKLHVRTVHLKQPAPYVSRSRIHRRKTQKEQTHIFVYPPDVDTNCHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01183182;
90% Identity: -
80% Identity: -