Paff006977.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560190.1:6382191-6396681[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 0.79 10.8 0.0 1 23 424 446 424 446 0.96 2 11 0.00027 0.017 16.0 0.8 1 23 459 481 459 481 0.97 3 11 3.3e-05 0.0022 18.8 0.7 1 23 487 509 487 509 0.98 4 11 2e-05 0.0013 19.5 2.5 1 23 516 538 516 538 0.99 5 11 0.00013 0.0087 16.9 0.3 1 23 544 566 544 566 0.93 6 11 1.1e-05 0.00072 20.3 0.1 1 23 572 594 572 594 0.97 7 11 5.9e-06 0.00038 21.2 1.5 1 23 600 623 600 623 0.96 8 11 5.2e-06 0.00034 21.4 1.6 1 23 629 652 629 652 0.95 9 11 0.0001 0.0065 17.3 1.4 2 23 659 680 658 680 0.97 10 11 3.3e-05 0.0022 18.8 1.1 1 23 686 708 686 708 0.97 11 11 0.018 1.2 10.2 0.0 1 21 714 734 714 738 0.91
Sequence Information
- Coding Sequence
- ATGACACAAACCTGCCTTGTGTGTGATGGCCGTGCACCATTCGGCCCGagttacataaaaaatgtgtttgatGAAACTaactTATCATGCAACAGAAAACTAATAGAAACATTGAATGAGCTTTTGGATAGGCAGTTGGATGAAGGGAGTGTACACACCAAGATACTGTGCAAGGAATGCTATAGGATATGCTTGAACTATGATATGCATAGAAATAACATGTCTATCTTAAAAACGAAAATATCGGATTTATACTACAACACACTGGAAAAGATCACTATTGAAATTCCTGCCATCGAGCCGCCCAAAACAGCCTCGCCAGCCAAGAAGCCGGTAAAAGGAAAAGTTGTGGTACCAGCTTCAAAACTGCAACCAGTGCCGGCAGATTTTCAACTGAATTTCGGAAAAATCGCTGCCTTGGCCTCTTCAGCGCAGGCAAAAAAACCTTTTCTCAACCTAAAAGTGACTATCGGCAACTCTGTTCTCACACAAAGCCTCGCCACGTCTATGGTGAAAATGGTCAAGCCTGTTGAGCTAACTAATGACGCAAACAGCATCAATATCGGCGAGTGGAACGTGAATGGTCTGCCTAACGAAATATTCTCAAACAATGATGAAAATTATGATGGAAATGATGGTTTAACTAATGAAATGGAGATTAATGaagattGCAATGGAAATCCTGAAGAATCACAAAGTGACAATCCCATTTTGATTGATACCTCGAGCATTAAGGATGAGAACGCGGACGAAGGGACGCAATATATAAATGCGGGTAATTTCGAATTGTTGCTGGAAGGACAAGAGCAGAGTGACCAGCCGCAGACAATAATGTTGGATAGTAACAGCTCAATACTCCAGATGATAtcggggcagaagctagtctatgAAAATGGCGAGATCTCCTTGGTGATGGacgaaaatgatgatgatgacgcgGACGGGCAAGATTCGAACGATGATGAATCTCAGATCGAGCTGCAAGTGTCGGGCGATGAGGAAACAGCGAACGCAATCATAGCGGCCGCTCAGGAACAAGGCGGTGCCTTCATAAAGGTGGAAAGCGGTGAGATGTACCGCGTCAAGTCCGTACAGAGCCACCCCTCAGAGTGCATTGTACCCGACACAGCCGCTCAGCTAGTCGCCAGGGAGAACGACAAGTACTCGTGCCTCGTCTGCAAGAATATGCAAGGTTCAGACAAAACTACGTATACAGGGGACGCGGTCAGTACGGTGGAGCACATGAAGACTGAGCATTCAGCCAAGGTCTACATTTGTGGACTGTGCGGCATTGTTATGAGGAACAGATCCGAATATGCCACGCATATGGctgAGCACACGAAGAAATTGCCACAGAAGTCCAAATCTCGTTCGTACGATTGCGAGCTATGCAAGAAGCGATACAACTCCCGCACGCTGCTGGTCGAGCATATGAACTTGCATACCGGCAAACGGCCATATGCATGCGACGTATGCGAGAAAACCTTTGCCTCGAAATATACAAGGCAAGCTCATTTAAAAACACACCAGGAGCGACCGCGGCCCTTCAAATGCAACACTTGCGGCAAGTCCTTCCTCTCGCAGCAGAACTTGACGCAACACGAGAAAACACATTTGGGAATCAAAAGTTTCGTCTGCAGCATTTGCAAGAAAGCCTTCGGCACTCAGCACAGTCTGGAAGTCCACGGAGTGGTACATAGCGGTCAGAAGACGCATATATGTGATGTATGCGAGAAGGCATTCGCCAGGAGAGCGGAACTGGCTGATCATATCAGGATACATACAGGGGAACGTCCGTTTGAATGCGAGGTCTGCGGCGCTAAGTTCTCACAGCGGTCGAACCTGCACTCCCATAGGAGAGCCACGCACTTTGACGACAAACGGCACAGCTGCCCCGACTGCCCCAAGCGATTCAAAAGACGGAGGTTACTGCAGTACCATATAAAGGCGGCGCACACTGGCGAGAGGCCGCTCAAATGCGAAGTATGCCAGTCCACGTTCGTGTATCCCGAGCATTATAAGAAACATATCAGGATACATAACGGCGAACGGCCGTATTATTGtgagatTTGCGGCAAAGCCTTCAATTCCCGCGACAACAGGAACACGCATCGCTTCGTGCACAGCGACAAAAAACCATACGAATGTCTCGCGTGCGGCGCCTCTTATATGAGGAAACGTATGCTGGTCGCACATATGAACGCCAATGGTCATTTGGCGGAATCAATAGTTGTGAACCAGCCAAGGGTGACTAAAGTCAATGAAAACTTATTCAACGGAAAAACAGGAGAGAGAAAACTACTTAATGCAGATAAGGATAGTATAGAAACTAAACAAGAATTGGAAGAAGGAGATTCCTCGCAATTTTACTCCTTATCAGAAGATGATAATTTGGACGCTGAAAACGGCACAGTCATTGCAACCATCAATTCTGAAAGCTTGGATCCGCAGCAGgCCACAGATGAAAACGGCAGCATCCTCCAATTCATCCAAGTGAAGATGCCAGATGGTAAAGATGGCTGGGTCGCGCTCAAAGATTGA
- Protein Sequence
- MTQTCLVCDGRAPFGPSYIKNVFDETNLSCNRKLIETLNELLDRQLDEGSVHTKILCKECYRICLNYDMHRNNMSILKTKISDLYYNTLEKITIEIPAIEPPKTASPAKKPVKGKVVVPASKLQPVPADFQLNFGKIAALASSAQAKKPFLNLKVTIGNSVLTQSLATSMVKMVKPVELTNDANSINIGEWNVNGLPNEIFSNNDENYDGNDGLTNEMEINEDCNGNPEESQSDNPILIDTSSIKDENADEGTQYINAGNFELLLEGQEQSDQPQTIMLDSNSSILQMISGQKLVYENGEISLVMDENDDDDADGQDSNDDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSHPSECIVPDTAAQLVARENDKYSCLVCKNMQGSDKTTYTGDAVSTVEHMKTEHSAKVYICGLCGIVMRNRSEYATHMAEHTKKLPQKSKSRSYDCELCKKRYNSRTLLVEHMNLHTGKRPYACDVCEKTFASKYTRQAHLKTHQERPRPFKCNTCGKSFLSQQNLTQHEKTHLGIKSFVCSICKKAFGTQHSLEVHGVVHSGQKTHICDVCEKAFARRAELADHIRIHTGERPFECEVCGAKFSQRSNLHSHRRATHFDDKRHSCPDCPKRFKRRRLLQYHIKAAHTGERPLKCEVCQSTFVYPEHYKKHIRIHNGERPYYCEICGKAFNSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNANGHLAESIVVNQPRVTKVNENLFNGKTGERKLLNADKDSIETKQELEEGDSSQFYSLSEDDNLDAENGTVIATINSESLDPQQATDENGSILQFIQVKMPDGKDGWVALKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -