Paff003165.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560186.1:16048862-16058148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0041 0.27 12.3 3.0 2 23 291 312 290 312 0.96 2 13 0.0011 0.072 14.0 0.1 1 23 318 340 318 340 0.97 3 13 0.00083 0.054 14.4 1.9 2 23 345 366 344 366 0.98 4 13 0.0014 0.09 13.7 2.9 1 23 372 395 372 395 0.97 5 13 0.0074 0.48 11.4 1.7 1 19 400 418 400 423 0.92 6 13 2.1e-06 0.00014 22.6 0.9 1 23 430 452 430 452 0.98 7 13 9.6e-06 0.00062 20.5 2.2 1 23 458 480 458 480 0.98 8 13 0.002 0.13 13.3 1.8 1 23 486 508 486 508 0.98 9 13 1.4e-07 9.4e-06 26.3 2.8 1 23 514 536 514 536 0.99 10 13 2.2e-06 0.00014 22.5 2.1 1 23 541 563 541 563 0.98 11 13 0.001 0.067 14.1 0.6 1 23 571 593 571 593 0.98 12 13 0.35 23 6.2 2.7 1 23 602 621 602 621 0.92 13 13 0.25 16 6.7 1.0 1 13 627 639 627 640 0.88
Sequence Information
- Coding Sequence
- ATGACTGACTTAATATCTCTATGCAAAGTGTGCCTAGCCGGTGATTTAAAATCTCATTCGATTAAAAACACTCCACTTCAGCTAATGTATGAGAATCTTCTAAATTCCAAGCCTGCTGCTGCTGATGATGGAAAGCCTGACATGGTATGCTACATCTGTCTATCACAACTACAGAGATGCTGTCGATTTCAGATCAAGTCTCAGAAATCGGAGGAAATCCTGACTCAGCTGTTTGATAATGGCATTGAGATATTGCCAGAGACCATGTCTGTATTGAATCAAGGGATCCAACATGATTACACACTGACGCCCGTAGAGGTATACAGTTGTCTTAAACACACACAAACAGTAAAAGAAGAAATCGAAGTTAAAGAAGAGTTGCTGTTCGAGGAGTCTCTTATGCCGACTGTGGGAGTCGATACGGTGATCAAACCTGACGCCACGCTGTGTAGGGCCTGCCTGGCCGTTGATGTTAAATCACACTTCATAGTCGACACCCCTCTTCAAATGATGTATGAAAAACTGACAGATACCAAGCTCGGCACGGAAGACGGCAGGCCGCAGTCCGTTTGTTACATTTGCTGCTCCCAGCTGGTGAGGTGTCGCAAATTCGTCAAGAAATGCAAGAAGTCCGAGAGAATCCTGCTGGAACTTGCCCGCAACGGCATTCAGttaacaCAAAGTACCGTCACTATACTGAACAGTAAAATGAAATCCAACTTTGTTGTAACTCCTGTGAAATCATTTTCGTATGGCTCTGACGataCACTGATACCCACAGTAATGATTGAAAAAATACCTGATCGACAGTTTCAAGAGCTATTGAAGACTTTCGCCATTAAAACGGAACCAGAGGACAATACCTATTTGTCCTGCAATGTTTGCGGACTGCAATGCAGCACCACCAATACATTGAACAAACACAAACGCTTGCACGATCCTAAAAGGAAATATCCGTGTGACATCTGCGCCTATCGCTACAGCTTACCCGACCAACTGAAAGCGCACAAATCAAGCCACGAAAATATCTCCAAATGCAGAAAATGCGACGAACAGTTTACGGGACTCCGGAAACTGAAGATGCATATGCTGACGCACACCGCAAAAGTTGAATTCAAATGCGAAATATGCTCTAAAAGGTTTAAGAACAGACGTGATGAAAGAAAGCATAATCGTACAGCGCATCAGGGCGATACATACAAGTGTAAAAAGTGTAAAATGTCCTTCAACAGTTCGCTAGGTTTACGGGACCATGATTTGAAAACTCACACGGGCAAGTTCCCGTTCTACACTTGCGATGTCTGCCGCAAAGTTTTCACCGGAAAATCTTTTTTAAGAAAACACATGGCTATTCACAATCCAAATTCTGAATACAAATGTGATAAATGCGAGAAAAGGTTCCGTCTGAAAGCGAACTTGAAACAGCATCTATACGTGCATGACGAAAATAAACGGTACGAATGCGATTCATGCCCGAAAAAGTTCAATCATAAAAACGGCTGGTTgctacatttaaaaaatcatactggagaaaagccatttACCTGCGCTATATGCGGTAAGGCTTTCAGAGATAAGTATTTATTGCGGCATCATCAGAAGACTCATACTAAAGCAAGATTCATCTGCGACGTGTGCAACAAGATGTATGCTAACAAGTACCATCTTAAAGAACACGTGCGCACACATATGACAGGTGTCAAAAGGCCATATGTCTGTGACATATGTTGGATGAGTTTTCGCTTAGTATTCCAATTAAAAACTCATAGAGAAAGACACATGAAAACAATAAAGAATCCAACGTACCCTTGCAGCATCTGCCACAAACAACTCGCAGATCTAAGATTGCATATGAGAATTCACACCGGCGAAAAGCCATATAGCTGCAATGTATGTAGCAAGACATTTgcttttaaagaaagagCACCTGAAATATCATATTCGAACGCACACCGGAGAAAAGCTATATGCCTGTAA
- Protein Sequence
- MTDLISLCKVCLAGDLKSHSIKNTPLQLMYENLLNSKPAAADDGKPDMVCYICLSQLQRCCRFQIKSQKSEEILTQLFDNGIEILPETMSVLNQGIQHDYTLTPVEVYSCLKHTQTVKEEIEVKEELLFEESLMPTVGVDTVIKPDATLCRACLAVDVKSHFIVDTPLQMMYEKLTDTKLGTEDGRPQSVCYICCSQLVRCRKFVKKCKKSERILLELARNGIQLTQSTVTILNSKMKSNFVVTPVKSFSYGSDDTLIPTVMIEKIPDRQFQELLKTFAIKTEPEDNTYLSCNVCGLQCSTTNTLNKHKRLHDPKRKYPCDICAYRYSLPDQLKAHKSSHENISKCRKCDEQFTGLRKLKMHMLTHTAKVEFKCEICSKRFKNRRDERKHNRTAHQGDTYKCKKCKMSFNSSLGLRDHDLKTHTGKFPFYTCDVCRKVFTGKSFLRKHMAIHNPNSEYKCDKCEKRFRLKANLKQHLYVHDENKRYECDSCPKKFNHKNGWLLHLKNHTGEKPFTCAICGKAFRDKYLLRHHQKTHTKARFICDVCNKMYANKYHLKEHVRTHMTGVKRPYVCDICWMSFRLVFQLKTHRERHMKTIKNPTYPCSICHKQLADLRLHMRIHTGEKPYSCNVCSKTFAFKERAPEISYSNAHRRKAICL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -