Paff002900.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560186.1:12932616-12937480[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.4e-05 0.0061 17.4 0.3 1 23 171 193 171 193 0.98 2 13 1.8e-05 0.0012 19.7 1.3 2 23 201 222 200 222 0.97 3 13 4.8e-05 0.0031 18.3 0.0 1 23 226 250 226 250 0.91 4 13 0.28 18 6.5 1.0 1 23 256 278 256 278 0.96 5 13 0.0002 0.013 16.4 7.3 1 23 284 306 284 306 0.99 6 13 0.045 2.9 9.0 0.4 1 19 311 329 311 334 0.92 7 13 0.00089 0.058 14.3 1.0 1 23 340 362 340 362 0.97 8 13 2.7e-05 0.0018 19.1 3.1 1 23 367 389 367 389 0.98 9 13 6.3e-06 0.00041 21.1 0.4 3 23 397 419 395 419 0.89 10 13 0.00022 0.014 16.3 2.4 1 23 425 447 425 447 0.96 11 13 2.2e-07 1.4e-05 25.7 0.9 1 23 453 475 453 475 0.98 12 13 0.0086 0.56 11.2 1.2 1 20 481 500 481 503 0.92 13 13 2e-07 1.3e-05 25.9 2.4 1 23 509 531 509 531 0.98
Sequence Information
- Coding Sequence
- ATGCACAAAACACTAATCTATGATCCTGCTATTGTAAATCGTCGAAGAAAAGACAAAGCTGTTAAGTTGCGTGTTGCGGGTGCGCTGTGCTTTGTGTGCGTCGCGCAGCTGCAGAGATGTCGTCGGTTCGCGGACACGGCGCGCAGAGCCACCGCCATACTCACACAGATAGCCAGCAAAGGACTAGAGGCAACACAAGATACACTGACATTGTTGAATATAGAAACGGTTGAGAGTTTGTCCATCAGCAACCCGCACTCCATGTATACATTGACTATAAAGGAATCTGAGAACAGCAGTTCTGAGGCAGATGTGAAGCAGGAGCCAGTTCTGAAAGTAGAAGTAATCCTTCAAGAGGAAGAAGCAACATTCGAGGTTCCGTTCGTAGATGGCCTCGTGTCGGAGGATCTGAAGGAGACCAAACAGCTGAAAGTAGAAGATGGAATTGCACCGACCAGCAGCAAGCTTCCGAAGCGAGATAAGAAGCGCATCCTCACTCGTCAGATGCGATACAATTGCGACATCTGCAGCCGAGCCGTCGACAACCTGTACAACCTGCAGAAGCACCGAGCGACCCACACCGAAGACCCCAAGTCGTTGACCTGCGAGACTTGCTCGAAGACCTTCCCCAACTACTATTCAGTGCGAATGCACATGCGCACGCATACCCTGCCGTACGCCTGCGCGCAGCCCGGCTGCGGGAAGGCCTTCGCGCAGAGAGGACAGCTCACCGTGCACTCCCGCGTTCACACTGGGGAGCGGCCCTACGCCTGCGACCAGTGCAGCAACACCTACACTCAGATAACTTCTCTTAAATTCCACCAGATATCCCACACCGGAAAGAAGCCGTACAAGTGCGACACATGCAGCAAGACCTTCAAGAAGAAGTGCTACTTGAGGACTCACGTTAGAAACCACCAGACGGAGTCTCACCCTTGCGAGCTGTGCGATGAGGTGTTCCCGCAGCTCGCGCGACTCGAGTCGCACTGCGAGCTCGCGCACTCCGCCGCGAAGCCTCACGTCTGCTCGCACTGCGACGCCAGCTTCGCGGTGCGTCCCAGTCTGCTGCTGCACCTGACAACGCACGCGGAGAATGTGTTCACGTGCGACCGCTGCGCAAAGAGCTTCCGCGACAAACGCAAGCTGCGGAACCACATGTACATGCACTCCGGGCTGAAGCCGCATGCCTGCGCACAGCCCGGCTGCGGGAAGAGCTTCGCGCGGAGCTCCCAGCTGAAAGGGCATACACGGGTGCACACCGGGGAGCGCCCGTACGCTTGCAAGGAGTGCAACAAGACCTTCTCGCAGACGAGCTCGCTGTCTTTCCATCAGAAGTTGCACAGCGGGGAGAAGCCGTACGTGTGCGAGATGTGCGGGAAGAGGTTCACGGACCGGTTCGGGCTGCAGAAACACCTGCGGCTTCACTCGGGAGCGCTGCCGTTCGCCTGTGACGCCTGCGATCTGCGCTTCGCCTACCCGAGCGCGCTGCGCCGGCACTCCAAGTGTCACCAAGGGAAGAAGCCCTATGTTTGCGACGTATGCAATAAGGTCTTCGCTAGGAATTGTAATTTGAGGCAGCACATGAAATCACACATGCGGAAAAAGCAGGTTCTTCAGAGCTCGGGAATGGCGAACGAAGATAATTCCTCGTAG
- Protein Sequence
- MHKTLIYDPAIVNRRRKDKAVKLRVAGALCFVCVAQLQRCRRFADTARRATAILTQIASKGLEATQDTLTLLNIETVESLSISNPHSMYTLTIKESENSSSEADVKQEPVLKVEVILQEEEATFEVPFVDGLVSEDLKETKQLKVEDGIAPTSSKLPKRDKKRILTRQMRYNCDICSRAVDNLYNLQKHRATHTEDPKSLTCETCSKTFPNYYSVRMHMRTHTLPYACAQPGCGKAFAQRGQLTVHSRVHTGERPYACDQCSNTYTQITSLKFHQISHTGKKPYKCDTCSKTFKKKCYLRTHVRNHQTESHPCELCDEVFPQLARLESHCELAHSAAKPHVCSHCDASFAVRPSLLLHLTTHAENVFTCDRCAKSFRDKRKLRNHMYMHSGLKPHACAQPGCGKSFARSSQLKGHTRVHTGERPYACKECNKTFSQTSSLSFHQKLHSGEKPYVCEMCGKRFTDRFGLQKHLRLHSGALPFACDACDLRFAYPSALRRHSKCHQGKKPYVCDVCNKVFARNCNLRQHMKSHMRKKQVLQSSGMANEDNSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01171658;
- 90% Identity
- iTF_01171658;
- 80% Identity
- -