Paff018565.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560203.1:10235079-10239562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00013 0.0082 17.0 3.1 1 23 131 153 131 153 0.98 2 13 0.051 3.3 8.8 0.9 1 23 157 179 157 179 0.97 3 13 0.00051 0.033 15.1 0.1 2 23 183 204 183 204 0.97 4 13 1.5e-06 9.6e-05 23.1 0.6 1 23 223 245 223 245 0.98 5 13 4.3e-05 0.0028 18.5 0.4 1 23 253 275 253 275 0.98 6 13 1.8e-06 0.00011 22.9 2.3 1 23 281 303 281 303 0.99 7 13 7.5e-06 0.00049 20.9 1.0 2 23 310 331 310 331 0.98 8 13 2e-07 1.3e-05 25.8 0.4 1 23 337 359 337 359 0.96 9 13 9e-05 0.0058 17.5 3.2 1 23 365 387 365 387 0.96 10 13 6.7e-06 0.00043 21.0 0.1 1 23 393 415 393 415 0.98 11 13 0.57 37 5.5 5.5 3 23 423 443 421 443 0.97 12 13 1.7e-07 1.1e-05 26.1 2.2 1 23 449 471 449 471 0.98 13 13 0.002 0.13 13.3 0.7 1 20 477 496 477 499 0.93
Sequence Information
- Coding Sequence
- ATGTTAGACATCAATGCATCGTGTAGGACATGTATGAAAAGTAATGTTATTCTAGTGCACTTGTACGAACCAGTGAACATTGATGAGAACAGCAATATTCAATTAGTTCAGCTACTATTGGAATGTGCCGCGGTACAAGTGAAGAAAGATGATGGTTTACCTCAAAACCTTTGCGAGGATTGTATCAAGGTGCTCCAACTTTCATACACATTCCGTAGCCAAGCGGCTAGGGCAGAGGAACAGTTCAAAATACTCTTAAAAGAAAAGATCAAGGAGGAGATCAAAGCAGAAAATGATGACTCCAATACTTACAATGACTTCTCATTTGATAATGACCTCAAATCTGAACCTGATGAAAACAAAGAAGATGAAAGACttgataaaaatacctacacatGTTCTACATGCGACAAAAGCTTTACAAAAGAGAAGAAATATCTTAAGCATTTAGAGTCCCACAGTTCACAATATGCATGTGCCTATTGCAACAAGCTATTTCTTAAAGAAACAGCTTTACAGaaacatttatataaacatGACGTGAATAGATGCCAAATATGTGGGGATATGTTTACTGATGAGTCTCTTTTATTCCAACATATTGCATCCCACAACGTTGCCACCATCAAGAATGAAAATGATGAACAAAATGACCTGAAACTGACATATCCTTGTGATGATTGTGAGAAGATATTTACTAACCCCAGATCTCTATCGCAGCATCAAAAAAAGCATAAACAGGAAGAACCTCTAAGTTTTACTTGTGATGTTTGTGAGAAAGAGTTTGTATCGAAGGCATTGGTGAAACGGCATTTGAAACTGCATGTTAAAGACAAGCCTTATAAATGCACTATGTGTACTAGAAGCTATTCGAGATTGGATCAGCTGAAGGTTCATTTGAAGACACATTCAGAGCAGAAACCTAATGTCTGCCCTTACTGTAATAAAGCATTCATTCAGATATGCAGTCTGAAAGACCATATCCGCACTCACACAGGCGAGACACCATATCTGTGCTCGGAGTGTGGGCGAGGCTTTGCAAATAGCTCCAACTTAAGACAGCACATGCTGCGGCATACCGGGCTTAAACCACACGCCTGCAAGCTGTGCCCAAAAACATTCTGCACTAAAGGTCAGATGACAGCTCATTTGGTAACTCACACGGGCGCGCACCCGTACGAATGCGATAAATGCGGGGCCGCCTTCACCAAGCCCACGTCCCTGAAGAAACACGCCATGATCCACACGGGGCAGCGCCCGTACGGATGCGAGACTTGTCTCATGCGGTTCACGTGCAAAGATCACTTGAAGCGCCATAACCGCATCCACACAGGCGAGAAACCATATAAATGCAGCCACTGCGACCGCGCGTTCACGCAAAGCAACGACCTGGTCAAGCATATGCGCGCACATCTCGGAGATAACATTTATGATTGCTCAGTTTGCTCAATGCGCTTCAGACTAAAGAGTGAGCTCAAGAATCACTATCCAGTCCATTTCGGCGACGACGGATCCATTAAGGAACTACTTAACAACGCAAATAGCTTAGAACACACACAGCCAGACATACCATCCGagacacatacaaacaaaccacACATAGACATCCAATCAGACACATATTCACAAATACAGTCAAATCCTAAGCCACATTTACAGCCAAACTTAGACATACAACCAGAAACATATTTACAAACACAGTCAAATCCTAAGTCACATTTACAGTCAAACTTAGACATACAACTAGAAACATATTCACAAACACAGTCAAATCCTAAACCGCATTTACAGCCAAACATAAATATTCAATCAGACACATATACCCAAACTCAGCCAAATCTAAAACCACAATTACATGCAACTACAGTTACATTACCAGACACACAGGACCACACACAACCAAACACAGAACCATACATACTATCAGACTTACAGTCACATATACAAACAGACACGCTAGCAAACATGAAGAAAACTAACAAGTTTATGATCACTATCAATCAGGATGGTATGGTGGCTATTAATATTGCACCAGAGACAAGATAA
- Protein Sequence
- MLDINASCRTCMKSNVILVHLYEPVNIDENSNIQLVQLLLECAAVQVKKDDGLPQNLCEDCIKVLQLSYTFRSQAARAEEQFKILLKEKIKEEIKAENDDSNTYNDFSFDNDLKSEPDENKEDERLDKNTYTCSTCDKSFTKEKKYLKHLESHSSQYACAYCNKLFLKETALQKHLYKHDVNRCQICGDMFTDESLLFQHIASHNVATIKNENDEQNDLKLTYPCDDCEKIFTNPRSLSQHQKKHKQEEPLSFTCDVCEKEFVSKALVKRHLKLHVKDKPYKCTMCTRSYSRLDQLKVHLKTHSEQKPNVCPYCNKAFIQICSLKDHIRTHTGETPYLCSECGRGFANSSNLRQHMLRHTGLKPHACKLCPKTFCTKGQMTAHLVTHTGAHPYECDKCGAAFTKPTSLKKHAMIHTGQRPYGCETCLMRFTCKDHLKRHNRIHTGEKPYKCSHCDRAFTQSNDLVKHMRAHLGDNIYDCSVCSMRFRLKSELKNHYPVHFGDDGSIKELLNNANSLEHTQPDIPSETHTNKPHIDIQSDTYSQIQSNPKPHLQPNLDIQPETYLQTQSNPKSHLQSNLDIQLETYSQTQSNPKPHLQPNINIQSDTYTQTQPNLKPQLHATTVTLPDTQDHTQPNTEPYILSDLQSHIQTDTLANMKKTNKFMITINQDGMVAINIAPETR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -