Basic Information

Insect: Perizoma affinitatum
Gene Symbol: -
Assembly: GCA_961405105.1
Location: OY560186.1:17180067-17184764[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00047 0.03 15.2 1.9 2 23 364 386 363 386 0.95

2 17 7.4e-05 0.0048 17.7 2.8 1 23 392 414 392 414 0.96

3 17 0.00017 0.011 16.6 0.3 1 23 420 442 420 442 0.97

4 17 0.2 13 7.0 3.7 1 23 448 470 448 470 0.98

5 17 3e-05 0.002 19.0 3.2 3 23 478 498 476 498 0.98

6 17 0.00097 0.063 14.2 0.2 1 21 503 523 503 524 0.92

7 17 0.00048 0.031 15.2 2.3 1 23 547 569 547 569 0.98

8 17 2.9e-06 0.00019 22.2 1.8 2 23 573 594 572 594 0.97

9 17 1.3e-05 0.00086 20.1 0.9 2 23 700 722 699 722 0.95

10 17 3.4e-06 0.00022 22.0 1.0 1 23 728 750 728 750 0.98

11 17 2.1e-05 0.0014 19.5 0.3 1 23 756 778 756 778 0.98

12 17 0.046 3 9.0 3.6 2 23 785 806 784 806 0.97

13 17 5.9e-06 0.00038 21.2 2.4 1 23 812 834 812 834 0.97

14 17 0.0048 0.31 12.0 2.0 3 23 841 861 839 861 0.97

15 17 0.00026 0.017 16.0 1.6 2 23 884 905 883 905 0.97

16 17 1.7e-05 0.0011 19.8 2.5 2 23 909 930 908 930 0.96

17 17 0.00019 0.012 16.5 4.9 1 23 953 975 953 975 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00047	0.03	15.2	1.9	2	23	364	386	363	386	0.95
2	17	7.4e-05	0.0048	17.7	2.8	1	23	392	414	392	414	0.96
3	17	0.00017	0.011	16.6	0.3	1	23	420	442	420	442	0.97
4	17	0.2	13	7.0	3.7	1	23	448	470	448	470	0.98
5	17	3e-05	0.002	19.0	3.2	3	23	478	498	476	498	0.98
6	17	0.00097	0.063	14.2	0.2	1	21	503	523	503	524	0.92
7	17	0.00048	0.031	15.2	2.3	1	23	547	569	547	569	0.98
8	17	2.9e-06	0.00019	22.2	1.8	2	23	573	594	572	594	0.97
9	17	1.3e-05	0.00086	20.1	0.9	2	23	700	722	699	722	0.95
10	17	3.4e-06	0.00022	22.0	1.0	1	23	728	750	728	750	0.98
11	17	2.1e-05	0.0014	19.5	0.3	1	23	756	778	756	778	0.98
12	17	0.046	3	9.0	3.6	2	23	785	806	784	806	0.97
13	17	5.9e-06	0.00038	21.2	2.4	1	23	812	834	812	834	0.97
14	17	0.0048	0.31	12.0	2.0	3	23	841	861	839	861	0.97
15	17	0.00026	0.017	16.0	1.6	2	23	884	905	883	905	0.97
16	17	1.7e-05	0.0011	19.8	2.5	2	23	909	930	908	930	0.96
17	17	0.00019	0.012	16.5	4.9	1	23	953	975	953	975	0.97

Sequence Information

Coding Sequence: ATGACTGATATAGTTATGTGCAGAGTGTGCCTCGCGGACAATATCAGAATGCAGGCGATCGCCAGCACTCCCTATCAGGAAATGTTTGAGAAACTTACAACTAATAAGTTCCTTACTGGAGATGGTCTCCCTGCCACAGTCTGCTATCTGTGTGCCTCGCAGCTGCAGAAATTCTGCAGATTCTTCAAACTATCTCAGATTACAGAGAAACTCCTCACAAAACTGGTTCAAGATGGAATTCAGTTATCTCATGCAACCATTCCTTCACTGGAGAGAGGGAACATTCATACCTATTCAATGAGCTCCATACAGTGCATGATCGTTCCCGAAGACTTTGAGGAACACAATGTGGAGGAGGAAACACTCCctgaagtaaataataaagaagaagCATCTGATTTTGACTTAGACATTTTGGAGGAAACCCTCCctgaattaaatattaaagaagaAGCTGATTTTGACTTAGACATTGTGGAGGAGAACACATTCCCTCATGTAAATGCTAAAAAAGAAGCATCCGATTTTGACTTAGGCATTGTGGAGGAAACCCTCCCTGAAGTAAATATTAAAGAAGAAGCATCCAATTTAGACACAAGTGAAATATTCTTTGAGGATGGAATCGAAGaGGAAAGTACCTGTTCCTACGCAAACCCTTCCGTCGACGATCTTAAAAGCGACCCTGAAGGCGCAAATGCTATGACTCCAAGCTACCAGAACAGTGACATGTCACACAAATTGTATTCAATAGTAGTGTACCAACCTAAATTCACGGCTGATAGCTCTATAGAGAACCAACCTAGCTCTAGACTAAACCAACCACACTCTATAGTGAACCATCCTCGCTCTAAAGTGAAGCAACCTCAACTCACAGCGCTAAGCTCTAGAGTGAACCAACCCAAAACTGCTCAAAGTTCTCTTGCTAAGTGTACCAGTCAAAGGAATCAAAAGACACCAGTGACATCTAAAAATGAAACAAGTGAATTGTATATTAGAAAAAGCTCAGTTAAATCTTCAACATCACATTTTAATGAAACAGAAGATAGCCAACTAGTTATCGGATTAAAACGTACAGCAGGTAAGAGTAAGACTTGTGAATTGTGCCATAAGACATTATCAACAAGTAGCAAATTAAAGGCACACGTCATTAAGATCCACATTGAAGGAAAGCAATTTGAATGCAACATTTGCAAGAAAACGTTCCGTCTAAAAAAAGAGTTGAAGAATCACTCAAAAGAGCACCCTCCCGATAAACCGTTCGCGTGTCTAGTGTGCAGCGAAAAATTCGCCAAAAAATTCGCTCTAGAAACACACATgagaattcatacaaaaaaacagctgTTCTCGTGCGATCTATGCAGTATGAAGTTCATGTGTAAAAGTAAGCTCATAACTCACGCTAGGACGCACACGGATGAAAAACCATTCGGTTGCAAGACGTGCTCGAAGAGGTTCACTAGCAGAAACAGCCTGAACACGCACATGCAAACGCACACGGGGCAAAAGTTCGCTTGTTACGCCTGTGATAAGAGCTTCATCTACAAAAGCAGTTTAAAACTACACGTCAAAATATGTTCCGAAAAAGAAAGCTTAAAGAAAGACTGTACTAGAAAGCATGTTGATTGTGCCCCATACGATTTTGAATGCGATTTGTGCAGCAAAGTGTTGAACAGCAAAGACTGTCTTTCAAAACACATGGAAAAACACACAGGGCTGACGTGCGATATATGCAATCGtacgttcaaaaaaaaacagaacctTCGAAATCACATTTTGTCACACATGGGGTTAAAACAAATCCACCTGAAATACCGTTTAACTCAACTCTTAAAAACCTGCACTGGtcaagaaaatacaaacaatacaagCTCTATAGTGAACCAACCTAGCTCTAGAGTGAACCAATCCAAAACTGCTGAAAGTTCTCTTTCTAAGTGTACCAATGAAGCTATTCAAAAGACACCATTGTCCCATAAAAAGGAATCTAGTGAATTGTCTATTACTAAAAGCTCAGTTGAATCTTTAAAATCACATTTGAATCACACAGAAGATTCAAAACCTTATATCAGATTAAAACGTAAAGCGATTAAGGGTACCACTTGTGAATGGTGCCATAAGATATTCTCAACAAATAGCTCTTTGAGAGCACACGTCATTAGAATCCACATTCAATTTAAGCCTTTTGAATGTGACATTTGCAAGAAAAAGTTCCGTCAAAAAATCGAGTTGAATAATCACGTTAAAGTGCACACTCGCGATAAACCGTTCGAGTGTCCCGTGTGCAGCGAAAAATTCGCCAAATATTACACTCTAGAAACACACATAAGAGTCCATACAAGACAACGGCTTTTATCGTGCGATCTATGCAGTATGAAGTTCACGTGTAAAAGTAAGCTCAAAATTCATGCTAGGACGCACACTGGTGAAAAACCATTTGCTTGCGAGACGTGCTCGAAGACGTTCAGTTACAGAAACCAACTGAACATGCACATGAAAACACACACGGGGGAAAAGCTCGCTTGTAACGTCTGCGATAGGAGCTTCATCTGCAAAAACAGTTTAAAGTTACACGTAAAAACTCATTTCGAAAAAGAAAACTTAAAGAAAGACTGTACTAGAAAGCATGTTGATTGTGCCCCATACGATGTTGAATGCGATTTATGCGGTAAAGTGTTGACCAGCAAAGACTGTTTTTCAAAACACATGGAAAAACACACAGGGTTGACGTGCGATATATGCAATCGTACGTTCAAGAAGAAACACAACCTACGAATTCACGTTATATCACACATGGAGCTAAAACCTCACGCTTCGATGCTTGGTAAAGAATACACAAGCAATACAGGAATACAATCCTTTACATGCGACCGGTGTGACCACACTTTCAACAAAAAGCATGACCTAATAAAGCACATGATCCTCCATGATGACACGTCCGTGATAGTAACGAGTGCTGATTGTTTTACTAACTAA
Protein Sequence: MTDIVMCRVCLADNIRMQAIASTPYQEMFEKLTTNKFLTGDGLPATVCYLCASQLQKFCRFFKLSQITEKLLTKLVQDGIQLSHATIPSLERGNIHTYSMSSIQCMIVPEDFEEHNVEEETLPEVNNKEEASDFDLDILEETLPELNIKEEADFDLDIVEENTFPHVNAKKEASDFDLGIVEETLPEVNIKEEASNLDTSEIFFEDGIEEESTCSYANPSVDDLKSDPEGANAMTPSYQNSDMSHKLYSIVVYQPKFTADSSIENQPSSRLNQPHSIVNHPRSKVKQPQLTALSSRVNQPKTAQSSLAKCTSQRNQKTPVTSKNETSELYIRKSSVKSSTSHFNETEDSQLVIGLKRTAGKSKTCELCHKTLSTSSKLKAHVIKIHIEGKQFECNICKKTFRLKKELKNHSKEHPPDKPFACLVCSEKFAKKFALETHMRIHTKKQLFSCDLCSMKFMCKSKLITHARTHTDEKPFGCKTCSKRFTSRNSLNTHMQTHTGQKFACYACDKSFIYKSSLKLHVKICSEKESLKKDCTRKHVDCAPYDFECDLCSKVLNSKDCLSKHMEKHTGLTCDICNRTFKKKQNLRNHILSHMGLKQIHLKYRLTQLLKTCTGQENTNNTSSIVNQPSSRVNQSKTAESSLSKCTNEAIQKTPLSHKKESSELSITKSSVESLKSHLNHTEDSKPYIRLKRKAIKGTTCEWCHKIFSTNSSLRAHVIRIHIQFKPFECDICKKKFRQKIELNNHVKVHTRDKPFECPVCSEKFAKYYTLETHIRVHTRQRLLSCDLCSMKFTCKSKLKIHARTHTGEKPFACETCSKTFSYRNQLNMHMKTHTGEKLACNVCDRSFICKNSLKLHVKTHFEKENLKKDCTRKHVDCAPYDVECDLCGKVLTSKDCFSKHMEKHTGLTCDICNRTFKKKHNLRIHVISHMELKPHASMLGKEYTSNTGIQSFTCDRCDHTFNKKHDLIKHMILHDDTSVIVTSADCFTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -