Paff004765.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- gtf3a
- Assembly
- GCA_961405105.1
- Location
- OY560188.1:3506557-3517059[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.00047 0.03 15.2 1.5 1 23 60 83 60 83 0.96 2 34 0.064 4.2 8.5 0.4 1 23 179 202 179 202 0.94 3 34 0.0045 0.29 12.1 1.7 1 23 236 259 236 259 0.97 4 34 7.3e-05 0.0047 17.8 0.3 1 23 266 289 266 289 0.97 5 34 0.00043 0.028 15.3 2.9 1 23 295 317 295 317 0.98 6 34 2.7 1.8e+02 3.4 1.9 1 10 323 332 323 333 0.95 7 34 1.5 1e+02 4.2 4.8 1 23 441 464 441 464 0.96 8 34 0.38 24 6.1 0.2 1 23 564 587 564 587 0.88 9 34 0.00026 0.017 16.0 1.2 1 23 593 615 593 615 0.98 10 34 0.0032 0.21 12.6 2.6 1 23 621 644 621 644 0.96 11 34 0.00025 0.016 16.1 0.2 2 23 652 674 651 674 0.96 12 34 8.2e-05 0.0053 17.6 2.9 1 23 680 702 680 702 0.97 13 34 9.5e-07 6.2e-05 23.7 0.5 2 23 709 730 708 730 0.97 14 34 0.033 2.1 9.4 1.7 1 21 736 756 736 757 0.96 15 34 0.035 2.2 9.3 1.6 1 23 955 978 955 978 0.94 16 34 0.14 9.4 7.4 0.1 2 23 1007 1029 1006 1029 0.93 17 34 0.36 23 6.2 0.6 2 23 1052 1073 1051 1073 0.96 18 34 0.0038 0.25 12.4 0.1 1 23 1077 1099 1077 1099 0.95 19 34 0.091 5.9 8.0 3.0 1 23 1104 1127 1104 1127 0.96 20 34 0.084 5.5 8.1 3.3 1 23 1236 1259 1236 1259 0.94 21 34 0.26 17 6.6 0.1 2 23 1286 1308 1285 1308 0.94 22 34 0.11 6.9 7.8 2.3 3 23 1332 1352 1330 1352 0.97 23 34 0.012 0.81 10.7 0.1 1 23 1356 1379 1356 1379 0.90 24 34 0.084 5.5 8.1 1.3 1 14 1384 1397 1384 1407 0.88 25 34 1.3 82 4.4 5.0 1 23 1555 1578 1555 1578 0.93 26 34 0.023 1.5 9.9 0.0 2 23 1605 1627 1604 1627 0.95 27 34 0.00048 0.031 15.2 2.4 2 23 1650 1671 1649 1671 0.98 28 34 0.0046 0.3 12.1 0.0 1 23 1675 1697 1675 1697 0.95 29 34 8.8e-05 0.0057 17.5 1.2 1 23 1702 1725 1702 1725 0.97 30 34 0.0035 0.22 12.5 1.8 1 23 1731 1754 1731 1754 0.96 31 34 1.7e-05 0.0011 19.8 1.0 1 23 1761 1784 1761 1784 0.92 32 34 0.00045 0.029 15.3 4.1 1 23 1792 1814 1792 1814 0.96 33 34 3.5e-06 0.00022 21.9 2.2 1 23 1820 1842 1820 1842 0.99 34 34 0.00043 0.028 15.3 2.8 1 23 1848 1871 1848 1871 0.98
Sequence Information
- Coding Sequence
- ATGGATGATGCGACGGAAATCAGTTCCGGTAATCAAGAAGCTGAACTAGATGTCGGACGAGGAAAGCCAGAGTTCGCTAAACCTAACCCAGAAGAATTGCGAAAGCAAAGACAcaacttgagacaaatattactGTTCACGAATGCGACGCCAATATCGCGCCACACTGATATGGGCTACGTATGTGGCTTCTGCTCCAAATGTTTCCAAAAACCTGCAGATCTCAAAAAACACACGCTAGTAATTCACGACAGTAAAACAAAGTCGACTTTCATGCATAAGACTTGCCTGTCGAGATTCCTGGTGAAACTTGACGTAACAAAACTTGAGTGTCTCATATGCGGTGATGGAATCGACTCCTTCACAGAGGTCATGGAACATCTCAGAGGCCACGGGAAAGTTTTGCATCATGATTTGAAAAACTACATAATCCCATTCGAGTTCGATTGCGACCTTCTTAAATGCATATTTTGTTTCGAAGTGCACAGAAAATTTAAATCACTGCAAATACACATGTATGAGCACTATCAAAACTTTATGTGTAGGGTCTGTGGCGTGGGTTTCGTTAACAAAAAAATGGTGTCCACACATTACCTCAACTCGCACGAAATCGGGTCATTCCCATGCTCTTATTGCGCGAAAATTTTTGATACGATCAATAAAAAGAAATCTCACGAGCATCATTCTCACGATCAGAAGAAAATGTACAAGTGTGGGTACTGCAATGAAAAGTTCAAGAGCTTCGATGCGAAAAGGTTGCATCAGATGAGCGAACACGATGTTAAGACTCCCGCGTTCGAATGCAGCGCGTGCAACAAAAGCTTCTCGAAGCCATCGCTGCTAGCCATTCACGTTAAGAAGGACCATCTCATGGAGACGCGTTTCAAATGCACTTATTGCGAGAAAGCGTACTTCTTTCAGTTTCAATTGAACACGCACATGGTCACTCATACGCATGCAAAAGATTTCAAATGTGAAGTTTGTGACAAACACTTTGgTATCGTCATCAGTGACGTCAAACCCATTAAACTGGAAATAGAATGGGACTTAGAAAAAAGAATGGAAACTAAGGCTACAGgtataaaagaagaaaaaatgGCATCGAAAGCCACACAAAAGAAAAAAGCAAATACCCCAAAACGGGTAGTAAATCGGCATAAGAAAGAACTAAGTTTGGAATCAGATGCATTCCAACCACTCAAAATCAAACCACCAGCGAAAGCTGAGCTTTTAGACGTGGACAAACATAGATATAACGTACGAGCGATTTTACAATATTCGAATGCTACACCGATCCGAGCGCACTACGCTGGGAATGGCTACGCATGCTGTTTCTGCAAGCAGTATTTCCATAAAGCGGCAGAACTAAAGACCCACACTTTACGAATACACGATGATCAAACCAAACGAAAATACATGCAAAAAGCATTTCTGTTTAAGCTCTTCGTAAAGCTTGATATCACATCCCTGCGTTGTAGCATCTGCACAAATGAAATGTTAACCCTCGAATCTCTCGATGAACTTATCGATCATTTAAATACTGCGCACCAAAAAGGCATTCACACTgacataaaaaatcaaataatgtgTTTTAAGTTAAACGAGGAAGTATTTCGGTGTTTTATGTGCTCGGTCGAATATCACAGCTTTAAAAACTTGTTAGAGCATGCACATTCACACTACAGAAATTTCGTCTGTGAAATATGTGACGCTGGTTTCATCAATAGGTTGAAACTTTATGGGCACGTGTACAATAAACACAAAGGCGCGGGGTCTCATAAATGCGGTACTTGTGAAAAAGTGTTCGACACGCCTATCAAACTAAAGACGCATGAACGGATTCACGCCGGCACTGTACTTTACAAATGTCATGAATGTGGTGGAAAATTCTCAAAGAAAAAAGAGAAGCGGGATCACATGATAAATGTGCACGGAGCAGAATTCGCACGGATCAAATGCACAGCTTGTGACAAGATGTTTATCAGCAAAGCCTCCCTTAGCGTTCACATAAACAGAGATCATTTGATGGATAGACGCCATCAGTGTGAACTCTGTGACAAGACATTTTTCACGTCTTCATTTTTAAGGGATCATATGGTATCGCACTCCAGGGTCCGGGAAATTCAGTGCGATGAGTGCCCCAAAACTTTTGCAAGAAAAAAAGCACTCCGTGAGCACATGAAGTCGCACACTGGCGACCGCCGATTCAAATGCACATACTGTGACATGGCTTTCTTGCAAAAGTGTAGCTTGAAGGGTCACTTGCgTGTCAACTTCAGAGACCACAAAGCAATAAAATCGGAAGTAGAGAACTCTTGGGGAGTAACTATAGTGAAAGTTAAAGGTCCAAAAGCTGACGAAACCGTAAAAAAAATTGACGATAGTAAACCTAAAACAATACAATCTAACAAACGCCAAATTAAATCAAACCGTCCACCAGGAAAGATATTTAACATTGAACAGGTAACTGTTGATTGTCAGAAAACCTTCGAAGACCTAACGATGGTGGTAGATAAGAAACCTGATACTTCGAAATTGAGTAGACACTCAACAATGAAGAAAGTGGCACAGAAATCTGATCAGACActaaaaatcaaagtcaatcCTCCACCAGACCTTGATTTTATGAACCCAATTAAAACGGCCACATTATGCACAAAAACGGATACAAACCCATCTAAATTGAAGCAAGGAAGAAAAATGAAATCTCTGAAGCCAAACGACGCACTAGTTCAGAGAATCAAAATAATTCCACCCCCAGATATGGATTTTATGATGGAGCTGGATAAGCACAGATTTAACATTCGGACTGTTATGCAAAATTCAAACGCCACCCCAATCAGGAACCACGTCAAAAGCGGTTTCGTCTGCTGTTTCTGCGATGCGCACTTCCCAAAACCTGGGGATCTCAAGGTCCACACTATTCAAAGTCATGCTGACGATGATAGTAAAGACAAATTCTTTCGCAAGAAGGCTGTCTTGTACTCATTTATGGTGAAACTAGACATTACATCGCTAGTTTGCAATATCTGTCACGAGGCAGCAGACACTCTCGAGCAACTAATCGAACACCTCAACGACAAACATCAGAAAGGGTTGCACACAGACATAAAAAGTCACATCGTGTGTTTCAAATTCGACAGCGAAGTAATGAGGTGCCTCGTGTGTTTGTTAGAATTTAACAGCTTCAAGCTATTGTCGGAACATATGAACCAGCATTACACGAATTTTGTATGCGACGAGTGCGGAGTGGGGTTCATTAATCGTAGACAACTCCTCCTGCACTCCGATAAACACAAAATGGGTGCACACAAATGCGGTTCTTGCGATAAAGTGTTTCAATCTTTAAAAAGGATGAAGACTCACGAACGTATTACCCACGTGCACAATTCCGGACTCGgtATCCAAACCAGACACCACAAAATCATTAAAACGGAACTAGATGTTTCGTGGGAAGTGACTATAGTAAAAGTTGAAGATACTTCAAACGTTGATAATAAAACTAGAACAACGCAAGCCAGAAAACGGCAATCGAAGACAAAGGCTCAAAAGCCAGGCGAGATCTTGATTCAAAGAACGAAAATAAAACCATCAACAGATCACTCCCCGGAGTCTTCAGAACTCGATAAACATCGGTATAACATTCGGACGCTATTGCAATGTTCAAACGCTACTCCGATCCGTACACATTCCATCGCAAGCGGATACGTATGTTGTTTCTGCAAAGCGCATTTCTCCAAAGCTGCGGATCTCAAAACGCACACCATACAAGAACATGACGATGAAACTAAAAGCAAATTCATGCAGGGAACTACTTTGTTCACGTTCATGGTAAAACTGGACATAACTTCACTAAGCTGCAACATTTGTAGCATGAACACGAATACCATGGAGCAATTGGTCGATCATCTGAACAACGCTCACCAGAAAAGAATCTACACCGATATCAAAAGCTACATCGCCTGTTTTAAACTAGAAGGGGAAGCAATGAACTGTCATATTTGTTCGGCAGAGTATAAGAGCTTTAAATTTTTACTGGAGCACATGAATAAACATTCTACTAATTTTATTTGCGATGAGTGCGGAGCTGGGTTTATAAATCTAGGGCAGCTTCGCTACCACTCAGAAAATTTACATATAATGGGCGAGTACAAATGCGACACATGTGATAaagtatttccatcatcgaaaAAGAAGTACTTCCACGAACGTGCCGCGCACTTTCAATCGTCGAAGAAGAGGTATGCCGACAAATCGTTTTGTCTCGTCATCAAAGACCAACCCATTAAAAAGGAAGTAAATGAATCGTGGGAGGATATTCCTGTAAAAGTTGAAAATCCAATGGTTAACACATGCGTTGTTGAAGATAAACCTACAACAGCACAAGCCAGAATTCGTCAAACGAAGAAAAAACCATtacgaaaaacaaaagaatcacAAATCCAAAAAAAAGCTCCAGCTATTCACGCTCCAGAAATTCAAAGCATTGAAATAAAACCTCCATCAAAACACGTTCCAGTGATTCAAGGTGTAAAAATAGAACCTCCAACTGAAGTGTCTCCAGATAAGTACGAGATCGAAAAACAGCGATATAATATTCGGACATTACTAAAGTGTTCAAACGCAACACCGATCCGAAGGCATTTAGGGTTCGGAAGCGGATACAGCTGCTGTTTCTGCAAAAAAAGTTTCCTTAAAGCAGCTGACCTCAAGACACACACAATTCATGACCATAACGATGACACAAAAAGCAAATTTATGGAAAGAATTCGTATGAATTCTTACATCGTAAAACTCGACATAACTTCTCTTAGCTGCAACATTTGCGGCATAGCTACAGATACCATCGAGCAACTTATTGATCATCTCAACAGTACTCATCAGAAAGGGCTCCACACAGACATTAAAAGTCACTTCGCATGTTTTAAACTCGACGGAGAGGCTACGAAATGTCACATTTGTTCTGCAGAATTCACTAGttttaaattgttacaagcgCATATGAACAAACATTTCATGAATTATATATGCGACGAGTGCGGAGGGGGGTTCATCAATCGGGGACAGCTCAAAATCCACTCTTACGTGCATCAAGCGGGCGCTTACAAATGCAGCACATGTGATAAAGTATTCAAATCGATTTTAAACATGCAATCGCACATACGCTTAACGCATTCgggtaatttaatttataagtgCCAACAATGCGAGAAAAGATTTCAAACGAAGAATGCCAAAAATAGTCACATGAATGAAGCTCATGGAGTCGTGCTTGCTAATTTCGAATGCGATATTTGCAACCGGATTTTCAAAAGAAATAGTTATCTGAAGGCCCATAGAGAcgaaaaacacttatttttgaCGGAAAAACGATACCAGTGCGACTTATGCGACCGTAAATTTTACAAACCATACCATTTAAAGCAGCATAAGGTATCGCACACTGGGCTGCGAGAGTTTCAATGCGAAATGTGCTCTAAATCTTATCCGAGGAAGAAAACGCTTAGAGAACACATGCGGTCACACACTGGCGATCGACGATTCAAATGCACTCACTGCGGGATGGCCTTCTTGCAAAAGAGCAGCTTGAAGGGCCACTTGCGTAGCCGGCACGGAGCTGAACTACAGCCGTAG
- Protein Sequence
- MDDATEISSGNQEAELDVGRGKPEFAKPNPEELRKQRHNLRQILLFTNATPISRHTDMGYVCGFCSKCFQKPADLKKHTLVIHDSKTKSTFMHKTCLSRFLVKLDVTKLECLICGDGIDSFTEVMEHLRGHGKVLHHDLKNYIIPFEFDCDLLKCIFCFEVHRKFKSLQIHMYEHYQNFMCRVCGVGFVNKKMVSTHYLNSHEIGSFPCSYCAKIFDTINKKKSHEHHSHDQKKMYKCGYCNEKFKSFDAKRLHQMSEHDVKTPAFECSACNKSFSKPSLLAIHVKKDHLMETRFKCTYCEKAYFFQFQLNTHMVTHTHAKDFKCEVCDKHFGIVISDVKPIKLEIEWDLEKRMETKATGIKEEKMASKATQKKKANTPKRVVNRHKKELSLESDAFQPLKIKPPAKAELLDVDKHRYNVRAILQYSNATPIRAHYAGNGYACCFCKQYFHKAAELKTHTLRIHDDQTKRKYMQKAFLFKLFVKLDITSLRCSICTNEMLTLESLDELIDHLNTAHQKGIHTDIKNQIMCFKLNEEVFRCFMCSVEYHSFKNLLEHAHSHYRNFVCEICDAGFINRLKLYGHVYNKHKGAGSHKCGTCEKVFDTPIKLKTHERIHAGTVLYKCHECGGKFSKKKEKRDHMINVHGAEFARIKCTACDKMFISKASLSVHINRDHLMDRRHQCELCDKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTYCDMAFLQKCSLKGHLRVNFRDHKAIKSEVENSWGVTIVKVKGPKADETVKKIDDSKPKTIQSNKRQIKSNRPPGKIFNIEQVTVDCQKTFEDLTMVVDKKPDTSKLSRHSTMKKVAQKSDQTLKIKVNPPPDLDFMNPIKTATLCTKTDTNPSKLKQGRKMKSLKPNDALVQRIKIIPPPDMDFMMELDKHRFNIRTVMQNSNATPIRNHVKSGFVCCFCDAHFPKPGDLKVHTIQSHADDDSKDKFFRKKAVLYSFMVKLDITSLVCNICHEAADTLEQLIEHLNDKHQKGLHTDIKSHIVCFKFDSEVMRCLVCLLEFNSFKLLSEHMNQHYTNFVCDECGVGFINRRQLLLHSDKHKMGAHKCGSCDKVFQSLKRMKTHERITHVHNSGLGIQTRHHKIIKTELDVSWEVTIVKVEDTSNVDNKTRTTQARKRQSKTKAQKPGEILIQRTKIKPSTDHSPESSELDKHRYNIRTLLQCSNATPIRTHSIASGYVCCFCKAHFSKAADLKTHTIQEHDDETKSKFMQGTTLFTFMVKLDITSLSCNICSMNTNTMEQLVDHLNNAHQKRIYTDIKSYIACFKLEGEAMNCHICSAEYKSFKFLLEHMNKHSTNFICDECGAGFINLGQLRYHSENLHIMGEYKCDTCDKVFPSSKKKYFHERAAHFQSSKKRYADKSFCLVIKDQPIKKEVNESWEDIPVKVENPMVNTCVVEDKPTTAQARIRQTKKKPLRKTKESQIQKKAPAIHAPEIQSIEIKPPSKHVPVIQGVKIEPPTEVSPDKYEIEKQRYNIRTLLKCSNATPIRRHLGFGSGYSCCFCKKSFLKAADLKTHTIHDHNDDTKSKFMERIRMNSYIVKLDITSLSCNICGIATDTIEQLIDHLNSTHQKGLHTDIKSHFACFKLDGEATKCHICSAEFTSFKLLQAHMNKHFMNYICDECGGGFINRGQLKIHSYVHQAGAYKCSTCDKVFKSILNMQSHIRLTHSGNLIYKCQQCEKRFQTKNAKNSHMNEAHGVVLANFECDICNRIFKRNSYLKAHRDEKHLFLTEKRYQCDLCDRKFYKPYHLKQHKVSHTGLREFQCEMCSKSYPRKKTLREHMRSHTGDRRFKCTHCGMAFLQKSSLKGHLRSRHGAELQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -