Paff018924.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560204.1:2864595-2866511[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 5.1e-05 23.4 0.0 16 40 28 52 22 57 0.86 2 2 6.3 3e+03 -1.5 0.1 30 45 563 578 562 578 0.87
Sequence Information
- Coding Sequence
- ATGGTTAATAGATACAAACGAAAAACTACAAACGCATCATGGGATGTGAAGATTATGAAACGTGCGATGGAAGAAGCTAACAAAACTTCCGTCAATAGTGCAGCCAAAAAATACGGTATCAACTTGTCTACATTACAGAGACACATAAAGAAAGGATGCCCAGAAAAGAAACTTGGAAGATTTTCAACAGTTTTTACAGCAGCTCAAGAATTGGAACTGGTTGAGTATCTATTTCATATGGATAATCTGTTTTTTGGACTGACGAAAACAGAATTTTTGCAATTAGTGTACCAGTATGCAGAGAAAAATAATGTTACCCATCCATTTAAAAACAGAGCTGCGGGTGATGATTGGTACCTTGGCTTCAAGATGCGAAATCCCGATGTAACTTTACGGCGTCCAGAACCTACATCAATTGCACGTGCAAGAGGCTTTAATAGGCCCCAAGTTGAAAGATTTTTCAATTTGCTTGAAGGAGAAATTGAGAAACACTATGTTGACGCAACGCGAATTTATAATGTTGACGAAACTGGCATACAAACAACAAGCAACAAACCACCAAGAGTCCTATGTAGATCAGGAAAAAAACAAGTTGGTGTTATATCCAGCGTCGAACGAGGCAAACTAACGACAGTCGTGTGCTGCTGTAATGCAGCAGGTTCTTTCATACCCCCATTTCTAATATTTGGGCGGAAACGAATGGTAGACAGGCTTCTTGATGGGGCTCCACCTGGATCCGCAGCAACTTGCAGCGATAATGGATGGATTAATGGGCCTGTATTCCTCGAGTGGTTGCGACACTTTGTAAGCATCACAAGGCCTtcacaagaaaaaaaagtgattttaataatGGACAACCATGAGTCCCATAAATACCTCGAAGCATTGGAGTTTGCATCTCAAAATCATGTGATTTTTGTGTCTCTTGCTCCACACACGACACATCGTATGCAACCGCTTGATGTGTGCGTCTACGGACCTTTGAAAACTTACTTCGAGCAGGTGGTTTCTGTGTTCCAAAGAACACATGTTGGACGCATAATTTCCCAATATGAGGTAGCAAGATTGTTTGGTGAGGCGTATCTGAAAGCGGCAAGTTTACAGAATGCAGTGAAAGGATTTTCGACTACGGGAATATGGCCCACGAACAGAAATATATTTGATGATTCCGATTACCAGCCATCAACTTTAACTGACAGACCAGATTCTACCGTTGTTCTTATCGACACTGAGGCTGATCTGATTACTCGTGAGCCCGAGACTACTGGAAACTATGTCCacagacaaattgaaaaaaCGATTCGTGAATCTACTGATTCTGACCGCACTGTGTCACCATCTGTTCTGGAACACATGGACGGCCGATCAATCAGCAAAACTCCGACGCCGACGGCAGATACTGAACTAGTGACACAACATCCCACCGGCCCCTTGACTCCTGATACAGGTaaccaaaataatattgtgaatgAGGAAACATTAACTGTAGCATCGCATGTGACTCCAATGGATATCCGGCCATCACCCAAAATGGAACCTAACAAAACCACCCGTAAACGGAAAGCACAGAAGGCTGAGATCCTAACGAGCACCCCTATAAAAGACCAGCAAAGGGAAAAAGATGGAAAAAAGAAGGATATGAAAAAAATTGACGGagtaaagaaaaatttaaaaggtCCAGGATCTTCCACAACCCtgagaaaacagaaaaaagaggCAATAAAGGTCAAAAGAGGTCCAAAGCTTTACAAGCATGATAAAACCGACTACCGATGCTTAGTGTGCAGCGAACTTTACTCTGATCCGCCTACTGAAGACTGGATAAGGTGTGACGACTGTCTGATGTGGGCTCATGAGGCTTGCACCTCATACGCTGGCAGAGGGACCTATTACTGCGACCTTTGCCAAGAGTTATAA
- Protein Sequence
- MVNRYKRKTTNASWDVKIMKRAMEEANKTSVNSAAKKYGINLSTLQRHIKKGCPEKKLGRFSTVFTAAQELELVEYLFHMDNLFFGLTKTEFLQLVYQYAEKNNVTHPFKNRAAGDDWYLGFKMRNPDVTLRRPEPTSIARARGFNRPQVERFFNLLEGEIEKHYVDATRIYNVDETGIQTTSNKPPRVLCRSGKKQVGVISSVERGKLTTVVCCCNAAGSFIPPFLIFGRKRMVDRLLDGAPPGSAATCSDNGWINGPVFLEWLRHFVSITRPSQEKKVILIMDNHESHKYLEALEFASQNHVIFVSLAPHTTHRMQPLDVCVYGPLKTYFEQVVSVFQRTHVGRIISQYEVARLFGEAYLKAASLQNAVKGFSTTGIWPTNRNIFDDSDYQPSTLTDRPDSTVVLIDTEADLITREPETTGNYVHRQIEKTIRESTDSDRTVSPSVLEHMDGRSISKTPTPTADTELVTQHPTGPLTPDTGNQNNIVNEETLTVASHVTPMDIRPSPKMEPNKTTRKRKAQKAEILTSTPIKDQQREKDGKKKDMKKIDGVKKNLKGPGSSTTLRKQKKEAIKVKRGPKLYKHDKTDYRCLVCSELYSDPPTEDWIRCDDCLMWAHEACTSYAGRGTYYCDLCQEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170533; iTF_00704951; iTF_00704952; iTF_00697279; iTF_00701906;
- 90% Identity
- iTF_01170533; iTF_00704951; iTF_00704952; iTF_00697279;
- 80% Identity
- -