Paff020578.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560206.1:4341673-4343352[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-08 8.5e-06 25.8 0.0 16 40 10 34 5 39 0.87
Sequence Information
- Coding Sequence
- ATGAAACGTGCGATGGAAGAAGCTAGCAAAACTTCCGTCAATAGTGCAGCCAAAAAATACGGTATCAGCTTGTCTACATTACAGAGACACCTAAAGAAAGGATGCCCAGAAAAGAAACTTGGAAGATTTTCAACAGTTTTTACAGCAGCTCAAGAATTGGAACTGGTTGAAAATATATTTGATGATTCCGATTACCAGCCATCAACTTTAACTGATAGACCAGATTCTACCGTTGTTCTTATCGACACTGAGGCTGATCTGATTACTCGTGAGCCCGAGACTACTGGAAACTATGTCCacagacaaattgaaaaaaCGATTCGTGAATCTACTGATTCTGACCGCACTGTGTCACCATCTGTTCTGGAACACATGGACGGCCGATCAATCAGCAAAACTCCGACGCCGACGGCAGATACTGAACTAGTGACACAACATCCCACCGGCCCCTTGACTCCTGATACAGTGTGCAGCGAACTTTACTCTGATCCGCCTACTGAAGACTGGATAAGGTGTGACGACTGTCTGATGTGGGCTCATGAGGCTTGCACCTCATACGCTGGCAGAGGGACCTATTACTGCGACCTTTGCCAAGAGTGA
- Protein Sequence
- MKRAMEEASKTSVNSAAKKYGISLSTLQRHLKKGCPEKKLGRFSTVFTAAQELELVENIFDDSDYQPSTLTDRPDSTVVLIDTEADLITREPETTGNYVHRQIEKTIRESTDSDRTVSPSVLEHMDGRSISKTPTPTADTELVTQHPTGPLTPDTVCSELYSDPPTEDWIRCDDCLMWAHEACTSYAGRGTYYCDLCQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -