Paff006005.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560189.1:5383884-5385078[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-08 1.4e-05 25.1 0.0 16 40 55 79 48 84 0.87 2 2 3 1.4e+03 -0.4 0.1 30 45 137 152 136 152 0.87
Sequence Information
- Coding Sequence
- ATGTGTGCGTGCAAAACGATAGCTTATCGTTGTGCCAATCACAGGCAGTCGGCCCGATTCTCTGGCTCACGCGGTTTCAAGATAGTTAATAGATACAAACGAAAAACTACAAACGCATCATGGGATGTGAAGATTATGAAGCGTGCGATGGAAGAAGCTAGCAAAACTTCCGTCAATAGTGCAGCCAAAAAATACGGTATCAACTTGTCTACATTACAGAGACACATAAAGAAAGGATGCCCAGAAAAGAAACTTGGAAGATTTTCAACAGTTTTTACAGCAGCTCAAGAATTGGCTGAGATCCTAACGAGCACCCCTATAAAAGACCAGCAAAGGGAAAAAGATGGAAAAAAGAAGGATATGAAAAAAATTGACGGagtaaagaaaaatttaaaaggtCCAGGATCTTCCACAACCctgaaaaaacagaaaaaagaggCAATAAAGGTCAAAAGAGGTCCAAAGCTTTACAAGCATGATAAAACCGACTACCGATGCTTAGTGTGCAGCGAACTTTACTCTGATCCGCCTACTGAAGACTGGATAAGGTGTGACGACTGTCTGATGTGGGCTCATGAGGCTTGCACCTCATACGCTGGCAGAGGGACCTATTACTGCGACCTTTGCCAAGAGTTATAA
- Protein Sequence
- MCACKTIAYRCANHRQSARFSGSRGFKIVNRYKRKTTNASWDVKIMKRAMEEASKTSVNSAAKKYGINLSTLQRHIKKGCPEKKLGRFSTVFTAAQELAEILTSTPIKDQQREKDGKKKDMKKIDGVKKNLKGPGSSTTLKKQKKEAIKVKRGPKLYKHDKTDYRCLVCSELYSDPPTEDWIRCDDCLMWAHEACTSYAGRGTYYCDLCQEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170516;
- 90% Identity
- iTF_01170516;
- 80% Identity
- -