Paff001835.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560185.1:13387752-13388243[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-08 1.1e-05 25.5 0.1 16 40 6 30 4 35 0.86 2 2 2.1 9.9e+02 0.0 0.1 30 45 88 103 87 103 0.87
Sequence Information
- Coding Sequence
- ATGGAAGAAGCTAGCAAAACTTCCGTCAATAGTGCAGCCAAAAAATACGGTATCAACTTGTCTACATTACAGAGACACATAAAGAAAGGATGCCCAGAAAAGAAACTTGGAAGATTTTCAACAGTTTTTACAGCAGCTCAAGAATTGGCTGAGATCCTAACGAGCACCCCTATAAAAGACCAGCAAAGGGAAAAAGATGGAAAAAAGAAGGATATGAAAAAAATTGACGGagtaaagaaaaatttaaaaggtCCAGGATCTTCCACAACCctgaaaaaacagaaaaaagaggCAATAAAGGTCAAAAGAGGTCCAAAGCTTTACAAGCATGATAAAACCGACTACCGATGCTTAGTGTGCAGCGAACTTTACTCTGATCCGCCTACTGAAGACTGGATAAGGTGTGACGACTGTCTGATGTGGGCTCATGAGGCTTGCACCTCATACGCTGGCAGAGGGACCTATTACTGCGACCTTTGCCAAGAGTTATAA
- Protein Sequence
- MEEASKTSVNSAAKKYGINLSTLQRHIKKGCPEKKLGRFSTVFTAAQELAEILTSTPIKDQQREKDGKKKDMKKIDGVKKNLKGPGSSTTLKKQKKEAIKVKRGPKLYKHDKTDYRCLVCSELYSDPPTEDWIRCDDCLMWAHEACTSYAGRGTYYCDLCQEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170516;
- 90% Identity
- iTF_01170516;
- 80% Identity
- -