Paff005059.2
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- clz9
- Assembly
- GCA_961405105.1
- Location
- OY560188.1:7186062-7188800[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-10 2.9e-07 30.5 0.1 2 41 15 54 14 58 0.91 2 2 9.8 4.6e+03 -2.1 0.1 25 39 818 832 818 834 0.89
Sequence Information
- Coding Sequence
- ATGGGAAAATATACTCGAAAAACAGAAAGAGGATCGTATTCGAAGGAGAAATTAAAGGAAGCTATACGTGAAGTTCAAAATGGCAGGATGAGTGGTTATAAAGCATCAAAAACGTACCAAATACCTCGTATGACGATAATGGACCacgtaaaaagaaaacaaaataaatctacaaCGCTCGGGCGAAACACAGCTCTGTCACCTGAAATTGAGTACAAACTAGCATCATCTCTTCATATGATGGAAAAATACGGATTTGGGCTTAGTAGAAAAGAAGTCTTGGAGATGGTTGGAGATTATGTCAATCAAAACAAACTTATTACTCCGTTTAAAAACGGTATTCCCGGTAAGGATTGGTTCGTAGCATTTAAAAAGCGTCATGGTCTATCCGTGAAAAAACCCCAAGCCGTAGAATATGCTCGAAAGAAGGCGGTAGACCCATTCATTATCTTCCCTTATTTTGATCTACTGGAAAAAACAATATACgaattaaatatacaaaacaaaccaTCTGCAATTTGGAACATTGATGAAACAAGTTTTTCCAACGACCCGGCGAAAACAAAAGTCGTTGGTGCTAAAGGCTATGCATCGACTCGAGTGATCTCATCACCAGGAAGAGATAATACAACAGTGCTACTTGGTGCCAGTGCTTCCGGAAAGAAAGCGCCACCCCTTATAAtcttaaaaggaaaaaacgtaTGGGATACGTGGACATCACCTGACGCATACCCTGGGACATCTTATGCCGCAAGTACAAATGGCTGGATGGagacacaaatatttgaacattatttcaaaaaatcttttctACCTCTAGTAAAAGATCAACGCCCGCTGCTCCTTATATACGACGGCCACTCCACTCACGTAGGACTGAACATTATTGAAGAGGCACGCAAAGAAAATATAACCATTTTAAAATTGCCACCCCACTCCAGCCATATTTTACAGCCCCTGGATATATCAGTAATGAAATCCTTCAAAAATCGTTGGGATCCTTTATTGGTTCAGTGGCAGCGGCTAAATGTAGGAAAAATTTTGCCAAAATCTGAATTCGCACGATTTATAGGACAGGTTTGGTCTGAAATAGACCCCCAAGTGTTGCGCAATGGTTTCAGAAAAGCTGGTATTTACCCAGTAAACCGTGAAGAAATTAAAGAAGACAAATTTGATATGTTAAAGCTTAGACATTGGAAAGAAATCGAAAGTGGGCGACATATTTCAACACAAGAGCAAAAGGACACAGAGAGAAATCCGAAAACTTTACTGACGATAgtacttaatttattaaataaaactctGACACAGGAATTCCTTGCTAGTGCAGAAGAATCCAATAGTCGCAGCAAATCTTTGGAAATATCAGTACTGGACCAGAGTGTTGCCTTTGTAACTCTGAACCGTGAAAACCTTGTGATTCCAGTAGAACCCAAAATTTGCAACAAACCGTTGGACAATTCTGTACAAGATCACAAAACTTCGTTTGAAGAACTACTCCTACAAAAATTGAAACGTGATGATAATTTACCAAAACCACAGCGCCATAAGGTAGCACTAGGCGCTGAAGTCATAACCCACGACGACGTActagaaaggaaaaaaaaagagCAAAAGAAAAAACTGATACCAaaagagaatataaaaaaagaaaagaaaaatgcAAAAGAAAAGTTGACTGGTAAACCTGATACAAATCGAAAACAAGCCAAAGAAGAAAATGAcgttgtttatttaaaacacatttcaaAAAACGATATTCACCTGCAACGTTTTATAGCCAAAGACTATAATGATCTACCGCAATGTTTACAGAGACAAGAATTTAATCCAAAAAAAATTAGAGTTCTTTCTAATGTGGTAATTAAAAAAGCCGATACAGGAATATataagaagaaagaagaaaataaatataacaaaaaaaagaataataatatttatgagaaCCCTAAGCCAAGACCATCAGAACTTTGCAAGACCGGATTGAAACGCCGTCGCAGCCATTCTTCAACGAGTGTTTCGGGCTCAATAAGTAGCCATAGTGATGTATATAGCAATGATCTACCGCATTGTTTGCAGAGGCAAGAACCTgatataaaacgaaaaaaaaaactttctaatgtggtaattaaaaaaaccgatacagGAAAAGATAAGAAGAAAGAAGGAAAGAAAGATAacaaaaaagagaaaaataatatttacgaaAACCCTAAGCCAGGACCATCAGGACTTTGCAAGACCGGATTGAAACGCCCTCGCAGCCATTCTTCAACGAGTGTTTCGGGCTCAATCAGTAGCCATAGCGATTCGGATATTCTTGATATAGAATCAGATGCATCGTTAATAGATGACGTTGAATGTAAGACTAGTGCACACATTTTGAACAAAGAAAATATAGACAGAAACATTTTAATCTCCGATATAGACAATGAAGAAAATCAAACTCCTATTTATAATGTGGGAGAAAATGTCTTGTTGAGATATTATTCACGACAGAAATGGACGTACTACTTGGGGATAATAGAACATATTAAACTAATAGACGAGGAGTTCTGTTATtcgattaaattttataaaacaattaagaAGCCAAAACTTACATTCAAGATGACAAAAACATGTGATCACGACGACGTTTCCGAAATGCAGATTGTGAAAAAAATTGATTTAACACAAAACCCTACAGCACCGAATACCTTTTTTATGTGTTGTGATGACAATTTGGTTTACTTTTAA
- Protein Sequence
- MGKYTRKTERGSYSKEKLKEAIREVQNGRMSGYKASKTYQIPRMTIMDHVKRKQNKSTTLGRNTALSPEIEYKLASSLHMMEKYGFGLSRKEVLEMVGDYVNQNKLITPFKNGIPGKDWFVAFKKRHGLSVKKPQAVEYARKKAVDPFIIFPYFDLLEKTIYELNIQNKPSAIWNIDETSFSNDPAKTKVVGAKGYASTRVISSPGRDNTTVLLGASASGKKAPPLIILKGKNVWDTWTSPDAYPGTSYAASTNGWMETQIFEHYFKKSFLPLVKDQRPLLLIYDGHSTHVGLNIIEEARKENITILKLPPHSSHILQPLDISVMKSFKNRWDPLLVQWQRLNVGKILPKSEFARFIGQVWSEIDPQVLRNGFRKAGIYPVNREEIKEDKFDMLKLRHWKEIESGRHISTQEQKDTERNPKTLLTIVLNLLNKTLTQEFLASAEESNSRSKSLEISVLDQSVAFVTLNRENLVIPVEPKICNKPLDNSVQDHKTSFEELLLQKLKRDDNLPKPQRHKVALGAEVITHDDVLERKKKEQKKKLIPKENIKKEKKNAKEKLTGKPDTNRKQAKEENDVVYLKHISKNDIHLQRFIAKDYNDLPQCLQRQEFNPKKIRVLSNVVIKKADTGIYKKKEENKYNKKKNNNIYENPKPRPSELCKTGLKRRRSHSSTSVSGSISSHSDVYSNDLPHCLQRQEPDIKRKKKLSNVVIKKTDTGKDKKKEGKKDNKKEKNNIYENPKPGPSGLCKTGLKRPRSHSSTSVSGSISSHSDSDILDIESDASLIDDVECKTSAHILNKENIDRNILISDIDNEENQTPIYNVGENVLLRYYSRQKWTYYLGIIEHIKLIDEEFCYSIKFYKTIKKPKLTFKMTKTCDHDDVSEMQIVKKIDLTQNPTAPNTFFMCCDDNLVYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -