Paff001673.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma affinitatum
Gene Symbol
clz9
Assembly
GCA_961405105.1
Location
OY560185.1:11133682-11136285[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-10 6.1e-08 32.7 0.0 1 40 14 53 14 58 0.92

Sequence Information

Coding Sequence
ATGCCACgtacttatgtaaaaaaaaaaattaaaacatacacCCCAGAAGATCTATCTGAAGCcgttcaaaaagtaaaaaatggaGAACTTACACAATATGGTGCAGCGCAAAAGTATAAAATTCCCCAGACAACTCTTCATGAACACGTCCACAAAAGTGAGGAAATTACTAGGCCAAATGCAGGTAGGCCAACTGTTATACCATTAGAAGACGAAAACAAATTAGCAGAAGCAATCACAACTATGGAAAAATGGGGATTCGGTCTGTCAAGGTCTGAAGTCATGGAGATTGTCGCTGAATACGTGCGGGTAAATAATATTCAGACaccatttaaaaacaatgtcCCAGGCCCAGACTGGTTCATTAATTTCCGAAAAAGAAATCGATTATCTATTAAAAAAGCTCAGCCTGTAGAATATGTGCGAAGAAAAATGACAGATCCATTCGTCATTGCTGAATATTTTGAGTTACTGGAAACTACTCTAAAGAATTTAGATCTTTTTGAAACACCCCAATCGATATGGAACCTGGACGAAACATCGCTGTGCCTGGATCCCTCCAGAACAAAAGTTGTTGGACAAATTAATAAACCTTGTGCGAGAACCACCCACGGAAGTGGTAAAGAAAATATCACTGTGTTGGCAGGCGTAAGCGCCAGCGGTAAAAAGTTGCCGCCTTTGATTGTATTCAAAGGCAAATTCGTTTGGGACCAATGGATGGCTGAGCTAGAAGGGAAATATTACGATTTTGAATTATCGTATGCAGCCAGTAAAAAGGGGTGGATGGAGACAGAAATTTTCTATAATTATCTAGAAAAAGTTCTCATTCCAAACCTAGGTGAAAAGCGACCTGTGCTGATTATTTATGATGGACACTCAACTCACGTCGATGTAAGAGTTGTAAAGCTGGCAGTTGAAAATGGTGTCACGATCCTTAAACTACCACCACACACATCACATTTGCTGCAACCACTTGATTTAGCAGTATTTAAGTCATTTAAAACAATATGGGATGCTAAATTGGTACAGTGGCAGCGTAGAAATATTGGCACAAAAATGCCCAAAAAAGTCTTTGCCCAAACACTGGCAGATACCTGGCAACAAACTAACCCCGATGTAATCAGAAGTGGATTTAAAAAAGCCGGAATTCATCCTTTTGATTCACAAGTGATATCTGTGGACAAGTACGATCCAGATGCATTCAAAAGATACCAAAAAAAGGTATCAGAAGCGTCTATTGCTCAGACACAAGTAAAAACCAAAAATCCAAAGACACTAAAAGAAATTTGTATTGACTTATTTAACAATCAGCTACCGAAAAACAATGATGCTTTTGAAAATTCAAACACTGGTAACGTTACCATGCTTTCTCAACTACCAAAGGCCGATATACAGACGTTAAGTTTTGTGGCTACACGGCCATCTGAAATACCTGTATGCCTACAGAACGTCAAGCCCGACGTTACCATGCTGTCTCAAGTATCAAAGGCCGATATACAGACGTTGAGTTTTGTGGCTACACGGCCATCAGAAATACCTGTATGCCTACAGAACGTCAAGCCAATACCAAATCAAACACAAATTTCGCCGAAAGtacaaataatttcaaatgtagTCATAAAAAAAGCAAACCAACTACCCCTTCAAGCCCAACCACTACCTCTTCAAGCCCAACCACTACCACCCCAAACACAATTAACATTTGAAGAATTGCTACTACGAAAAATACTACAAGATAAAAAAGATACAACTTTGACAAAAAAGAAACGTGTTACTAAAGGTGCTGAGGTAATAACTGCAGCCATGGGTAAGGCAATTTTAGAAGAAatggaaaaaactaaagatacAAAAGCGAAAACAAAAACCAATAAATATAACGAAAAGAAAACgacaaaagtaaacaaaaagGATGATTCTGTAATCACACATATAGCACAAAAACAAGATGAACAACCAGGTCCTTCAGGCTTAAAAACTACGAATAAACGAAAGCGTCGGCTTTCACTTGACAGTACCAGTACAACAAGTGTATCCGACATCATGAGTGACGTTAGTGAGTCTGATATCGTTGAATGGGTTGATTTCGAAGAATTAATGGCTGAATACTCTGAAGATGATTTTAAAATAGACAAAAGAGAACCATGGTCTGAAAAAAAGGAAGACGTGACATGTGGTAAAAACGTTAaaagatgtaaaaaaatacctgatAAAAAGACGCTGAACTGCAAAGATTCAAAGGAAAATGGCAAAAATAAACAGCAGCCACAAGAACTGGAAAATAAAGACAAAGTATATGAAACCCAAGAAGAGGAAAGTTACAAATTAAATGATTCAGTGCTTGTGAGATATTTCATTAGAAAAAAATGGAGGTACTATATTGGGTTCATAGAAGAAATAATGAAACACGAAGAAACGAACTTCTCTATTAACTTCTTAAAAACTATGAGACCACAACAGCAGCTAACCTTTATTACGACCAAAAGAAAAGATTGTGATAAAGTTCCAGAGGAATTAATAGTAAAGAAGATAGCTATACAAAAGAAAAGTGATAATGAAAAAGAATATTTCTTATGTAATGGTGAAGATGCGATTTATTTTGACTGA
Protein Sequence
MPRTYVKKKIKTYTPEDLSEAVQKVKNGELTQYGAAQKYKIPQTTLHEHVHKSEEITRPNAGRPTVIPLEDENKLAEAITTMEKWGFGLSRSEVMEIVAEYVRVNNIQTPFKNNVPGPDWFINFRKRNRLSIKKAQPVEYVRRKMTDPFVIAEYFELLETTLKNLDLFETPQSIWNLDETSLCLDPSRTKVVGQINKPCARTTHGSGKENITVLAGVSASGKKLPPLIVFKGKFVWDQWMAELEGKYYDFELSYAASKKGWMETEIFYNYLEKVLIPNLGEKRPVLIIYDGHSTHVDVRVVKLAVENGVTILKLPPHTSHLLQPLDLAVFKSFKTIWDAKLVQWQRRNIGTKMPKKVFAQTLADTWQQTNPDVIRSGFKKAGIHPFDSQVISVDKYDPDAFKRYQKKVSEASIAQTQVKTKNPKTLKEICIDLFNNQLPKNNDAFENSNTGNVTMLSQLPKADIQTLSFVATRPSEIPVCLQNVKPDVTMLSQVSKADIQTLSFVATRPSEIPVCLQNVKPIPNQTQISPKVQIISNVVIKKANQLPLQAQPLPLQAQPLPPQTQLTFEELLLRKILQDKKDTTLTKKKRVTKGAEVITAAMGKAILEEMEKTKDTKAKTKTNKYNEKKTTKVNKKDDSVITHIAQKQDEQPGPSGLKTTNKRKRRLSLDSTSTTSVSDIMSDVSESDIVEWVDFEELMAEYSEDDFKIDKREPWSEKKEDVTCGKNVKRCKKIPDKKTLNCKDSKENGKNKQQPQELENKDKVYETQEEESYKLNDSVLVRYFIRKKWRYYIGFIEEIMKHEETNFSINFLKTMRPQQQLTFITTKRKDCDKVPEELIVKKIAIQKKSDNEKEYFLCNGEDAIYFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01219713; iTF_01170502;
90% Identity
iTF_01219713; iTF_01170502;
80% Identity
-