Pace023085.1
Basic Information
- Insect
- Periphyllus acericola
- Gene Symbol
- -
- Assembly
- GCA_949715065.1
- Location
- OX454272.1:13492295-13495138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.083 12 7.2 0.1 2 23 126 145 126 145 0.94 2 15 0.091 13 7.0 0.1 1 23 159 182 159 182 0.90 3 15 3.1 4.4e+02 2.2 0.1 3 23 278 299 278 299 0.87 4 15 0.019 2.6 9.2 0.8 1 20 311 330 311 332 0.94 5 15 0.71 1e+02 4.2 2.1 3 17 339 353 338 359 0.76 6 15 0.92 1.3e+02 3.9 1.2 2 23 370 392 369 392 0.93 7 15 1e-05 0.0014 19.5 0.4 2 23 399 420 399 420 0.97 8 15 0.00013 0.018 16.0 0.8 1 23 426 448 426 448 0.96 9 15 5.2e-05 0.0073 17.3 2.3 1 23 454 476 454 476 0.99 10 15 0.99 1.4e+02 3.8 0.0 2 23 529 551 528 551 0.88 11 15 0.0031 0.44 11.7 1.1 1 23 561 583 561 583 0.98 12 15 0.0085 1.2 10.3 2.8 1 23 645 668 645 668 0.97 13 15 0.0013 0.19 12.8 0.6 1 23 680 703 680 703 0.96 14 15 0.0008 0.11 13.5 1.5 1 19 713 731 713 732 0.95 15 15 0.058 8.2 7.7 1.4 2 23 803 824 803 824 0.96
Sequence Information
- Coding Sequence
- ATGCGGGGACACTTTGTCCACCGGACGCAGGAAGTGGCGGTGTGCACCGCGCAAAAGCCCCGCGGTCGACTGCGGCACGCGCGGGGACACCGGAGAATGTCGATCGTCGCGAGCAGACAAGTGATCGTGTACGCGAAACCGGGCGACGGCGCGACGGACGCCGTCGACGAGCTGGCGACGCCCGGGACGGAGCAGAACCGCAAAGGCCGGCCCAAGGGGTCGAAGAACAAGTCGTTGTTCAACTCGTTCAACCACCGGTGCGAGAAGAGATCGTTCGCGTACTCGATGCGGTCCGGGGCCGTGGACAGGTGCGTGCCGTGCGGCCGGCCGTACGACGGCGACCCGCTGGCCCACAGCGAGGAGCACCACGCGAACGTTTGTCCCGTGTGCGGCCGCTGGTTCAGGTCGTCGCTGGTCGAGCACATCAGGTCACACGGGACGCGCCATCGGGCGCACGTGATGACGGTCACGTGCTACGAGTGCTACGAATGCCGCGAAAAGTTCGGCAACGCCCGAACCATGGCGGAACACGTGTCGGACGAGCACATCGTGCGCGGCGCGGGTGGCAGTGACGTCGGgggtgtcggcggcggcggcagtgacGTAGGCGGCGGGGGAGGAAGGTGCGCGTTATGCGACTCGACGGACTTGCCGGACACCGAGGACGGGTTGCGCGACCACGTGTCCGAAGTGCACGCGGCGGACGCGAACGATTTCCCGCGCGCGTGCGCGTACTGCGGCGCGTCGCAACAGGACCGGACGAGCCTGGTGGAGCACTTGGTGGAAATGCACTCGCGGAAAAGGCCGGCGGTCGTGGTCGACGGCCTCGGGTGCCTGTCGTGCGGCGTGCGATTCGATGACCGGGCCGCGGTCGTCGACCATTTGGTGCACGTGCACTGCCCGATGAAGTCGTTCAGCCACCCCGCGGTCTACCGGTGCCGCGTGTGTAAGGCGGGCTTCAAGACCCAGATAAACGTGCTGCGGCACGCGTGCAACGGCATCAAGGTGCCGCACTGCGAGCGGTGCGACAAGACGTTCCCGTCGAAGATGCGGTACGCGTTCCACCTGCAGTTCCACGATCATCCCAGGTACGCGCGCATGCACCTGCACTGCGACCTGTGCCTGGCCGAGTTCGCGGGCGAGAACCACCTGTACGACCACATCCGGTTCCGGCACGAGCTGCACGACAAGGCGGTGTGCGAGGTGTGCGGCCGCACGTTCAAGTCGTCCATGGGCCTGAACATACACCGCCGGTACCACGACGGGCTGCGCAACTTCCCGTGCAAGCTGTGCGACAAGTCGTTCCTGAACAAGTCCACGCTCAGGGAGCACGAGATCTCGCACATGGACGTCAAGCCGTTCCAGTGCCACATATGCGGCCAGTACCTGAGCCGCGCGTCCCGGCTGCGGTCGCACGTCAAGACGCACCGGGCGGCCGAGTCGACGGAGCAGACGTGCTACTGCTGCGGCGCGTGCGGGTTCGTGGCCCCCGGGGCCGGGCCGCTCGCGGAGCACGCTAGCAAGGCGCACGGGGCCGCGGGGCGGACGATCGGCGACGCGGTCGTGCAGCTCACGTGGGTGGTCAAGTGCGAGTTCTGCGACTCGACGTACGCGGACGCGGCGCGCCTGGACGAGCACCGGGACGCGGCGCACGCGAACGCCGCGGACGACTCGGAGGCGTTCGTGTGCCTGGTGTGCTCGTCCGCGTTCAGCACGTACTCCCGGCTCACCACGCACAAGCTCACGCACGGCATCAACGTCGAGTCCGCCATGGCCGACATCGGCCGCGAGTCCGACAccaacgacgacgaccgcgaccgGTTCCACATACCGCAGTACTTCTCGTGCCAGCACTGCGCCAAGATGTGCCTACACTACACGTACTTCTGCCTGCACAGGCGGCTCAAGCACGCGCCCGGCGGCGCGCAGGCGCACACGTGCGACCTGTGCCGCGCGGACTTCAAGACGTCCTGGAAGCTCACGTACCACAAGAAGACGGCGCACCAGCGGCGCGCGTCCGCCAAACCGGAGGACAAGTACCAGTGCACCGTGTGCTCGCGCGAGTTCGTCAAGCTGGGCGCGTTGAACCTGCACAAGACGCGCACGCACATCGACGTGGTGGGCGACGTGTGCAAGTACCTGTGCCACCGGTGCGGCAAGTTCTTCAGCTCCGAGGAGTCGCTGCGGACCCACGACCGGGAGGACGCGTCGTGCGGGTACCGGTGCAACGACCCGGCGGCCGTGCGGCGGTACCGGCGCCGCACGTACAGGATGTCCACGTCCGCGGCCGCCACCGCGACCGTCGACcgcccgccgccgtcgccgaaGGACGATGTGGACAGCGCCGCGGCCACGGTCCCGGCCGACGATCCCCCGCCACCGGCCCCGCCGTCGCCCGTGCTCGCGGTTTGCGTGCTGTGCCACGAGCTTTTCCACGACCCCGCGCTGTTCCGGCAACATCTGCGCGACCACGCGACCGTGGACGGCACGTTCCTTTGCGAACCGTGCCTCGTCCCGTTCCTGTCCGTGGCCGCGTTCGACGACCACGTGGCCACGCGATGCCCGTCCGCTCGCGAGCCCAAAGACGAACCGAAACCGCTGGTCGTCGACTGCTCGGCGATATTCCATGCGACGCCACCCGGACGAAGCGCCGCAGAAACGCTGTCCGGTCTTCACGCGTCGGTCGCCGTCGACGGAAGCAGGACTTCCCAGATGTCCTTGGTCGATGAACTCTTCTCGATCATTTCCACCCCGCGCACGGCGCTCGTGTTGGATCGCATGGATTCCGTGCCGTCGGACGAcataaatgaaatattcaacGCCCTCGTCGACAATCCCAAGTAA
- Protein Sequence
- MRGHFVHRTQEVAVCTAQKPRGRLRHARGHRRMSIVASRQVIVYAKPGDGATDAVDELATPGTEQNRKGRPKGSKNKSLFNSFNHRCEKRSFAYSMRSGAVDRCVPCGRPYDGDPLAHSEEHHANVCPVCGRWFRSSLVEHIRSHGTRHRAHVMTVTCYECYECREKFGNARTMAEHVSDEHIVRGAGGSDVGGVGGGGSDVGGGGGRCALCDSTDLPDTEDGLRDHVSEVHAADANDFPRACAYCGASQQDRTSLVEHLVEMHSRKRPAVVVDGLGCLSCGVRFDDRAAVVDHLVHVHCPMKSFSHPAVYRCRVCKAGFKTQINVLRHACNGIKVPHCERCDKTFPSKMRYAFHLQFHDHPRYARMHLHCDLCLAEFAGENHLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHDGLRNFPCKLCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHRAAESTEQTCYCCGACGFVAPGAGPLAEHASKAHGAAGRTIGDAVVQLTWVVKCEFCDSTYADAARLDEHRDAAHANAADDSEAFVCLVCSSAFSTYSRLTTHKLTHGINVESAMADIGRESDTNDDDRDRFHIPQYFSCQHCAKMCLHYTYFCLHRRLKHAPGGAQAHTCDLCRADFKTSWKLTYHKKTAHQRRASAKPEDKYQCTVCSREFVKLGALNLHKTRTHIDVVGDVCKYLCHRCGKFFSSEESLRTHDREDASCGYRCNDPAAVRRYRRRTYRMSTSAAATATVDRPPPSPKDDVDSAAATVPADDPPPPAPPSPVLAVCVLCHELFHDPALFRQHLRDHATVDGTFLCEPCLVPFLSVAAFDDHVATRCPSAREPKDEPKPLVVDCSAIFHATPPGRSAAETLSGLHASVAVDGSRTSQMSLVDELFSIISTPRTALVLDRMDSVPSDDINEIFNALVDNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -