Basic Information

Insect: Periphyllus acericola
Gene Symbol: -
Assembly: GCA_949715065.1
Location: OX454265.1:12975664-12977631[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0005 0.071 14.1 3.5 3 23 161 181 160 181 0.98

2 10 0.00016 0.023 15.7 4.0 1 23 187 209 187 209 0.96

3 10 2.4e-05 0.0034 18.3 4.9 1 23 215 237 215 237 0.99

4 10 5.9e-06 0.00083 20.2 3.5 1 23 243 265 243 265 0.97

5 10 1.1e-05 0.0016 19.3 1.4 1 23 271 293 271 293 0.97

6 10 0.00025 0.036 15.1 0.1 1 23 299 321 299 321 0.98

7 10 0.059 8.4 7.6 0.1 3 21 328 346 327 347 0.93

8 10 0.0002 0.028 15.4 0.0 3 23 369 389 368 389 0.97

9 10 7.4e-05 0.01 16.8 2.2 1 21 439 459 439 460 0.93

10 10 1.9e-05 0.0027 18.6 3.5 1 23 471 493 471 493 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0005	0.071	14.1	3.5	3	23	161	181	160	181	0.98
2	10	0.00016	0.023	15.7	4.0	1	23	187	209	187	209	0.96
3	10	2.4e-05	0.0034	18.3	4.9	1	23	215	237	215	237	0.99
4	10	5.9e-06	0.00083	20.2	3.5	1	23	243	265	243	265	0.97
5	10	1.1e-05	0.0016	19.3	1.4	1	23	271	293	271	293	0.97
6	10	0.00025	0.036	15.1	0.1	1	23	299	321	299	321	0.98
7	10	0.059	8.4	7.6	0.1	3	21	328	346	327	347	0.93
8	10	0.0002	0.028	15.4	0.0	3	23	369	389	368	389	0.97
9	10	7.4e-05	0.01	16.8	2.2	1	21	439	459	439	460	0.93
10	10	1.9e-05	0.0027	18.6	3.5	1	23	471	493	471	493	0.97

Sequence Information

Coding Sequence: ATGGACGACGTTGTTGTTTCCAGGTATAATGACAATCTTCAGCCAATAAGATTGGTAACAGACCATCTGACCGAGCGGCTGAACCTTGAGGGTGCGTTGACGTTGCCTATTGCCAGCCCTAGTTCAGTGTATTCAGAGCCCAAACAGGTAAAGCCAGCGAAAAAGAACAGGCTGACGACCGGATCACAGAATATTCGGCTTGCGGCCAAAAAAAATCACCAGAATGACGTGACAACGATGAGTAACAATCTCATGTTTCGAAGCATGTTTTTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCTATACAATTGTCTACAACTGATGGAGAATATTTCACCCGTAAGACTGGGAATCCGAATTTGAATACCcatcatcagcagcagcagcagcaagcAGTTGCAGCTCTTGCAAATCACGACTCGAGTTCTAGTGTTGAAAAACCATTACAACCTCCCAAAGCTCGCCCTCACGGTTGCGAAGAGTgtggaaaaacatttttaatgaaacatcATTTGTCAACACATATGAGAGGTCATACCGGTGAGCGACCACATATTTGTCCTGAATGTGGTAAGACCTTTGCACTTAAACACTGTTTAAGCACACATTTGTTATTGCACAGCTCTGAACGACCTTACAAGTGTTTGGAGTGCAATAAAAGTTTTACCTTAAAACATCATTTGGTAAGTCATGAAAGAGTACATACACGAGATAGACCATTTGAGTGTCCTGAATGTCGACGTAGATTTCCCCAGAAACGTCACTTGACCACTCATATTAAATTCCATTCAGGAGAACGGCCATATTCTTGTTCCGTTTGTGGTGAGACATTCTCGCGTGAAGAACATCTAGTCATGCATTCTAGATTCCATGGAGGAACTCAACCATTCGTGTGCCCAGACTGTGGAGCTGCATTCCTGCGTAAATTTGAATTGGTTAATCATGAACGACAACATGGTCGTATACCTGAATCTTGTCCCGCTTGTGGTAAAGAGTTTTTGCAAAGACGCACATTATTGGTCCATGTTAGAAATTGCGGCTTGAATTCATCGACTCCCGTACATAGATCTCCTTATACCGCAACAGCAAGCAAAGCATGccgTGAATGCGGTGAAACATTTGCTAGCGATGAAGGTCTTGCTCTTCATATGCGATTACACATTGGTGACCATAGTTTCCTGTCTGACATTTGTAGTCTAGCTGCTACTTTAAAACAGAGTGTACAGGGCGTATCAAATGGAATTGCTAATGTACAAAATCATCACCAAGCCCAACATCAAGCTAATACTGTAGCCAATAAGAAATCTCACTACTGCGGGGATTGTGGTCGTGGTTTCACCCAAAAACATGGTTTACAACAACATCACATCAAATATCCAAACGCTACTTGTAAAGACAAACCGTTTTCATGTCAAAAATGTGGTAAGAGTTTCATGCAAAAAAATCACCTTGTGCTGCATGAAAGACAACATATGGATCCACCACCATCTAGAAATCGTAATCCAACGACCTCGGCTGTCCAATCAATACAACATTTACAGTCTGAACAGGTTGGCCTGCAACCCACTCCTCTTCATGCATCTATTTTGGGGCTTCAGCCTATTAGACATATTCAATCTTCTGGTAGTCAACCTCAACTTTTAAGACATCACCCAAGCGAGGCTCATTCAGGGTCTTAA
Protein Sequence: MDDVVVSRYNDNLQPIRLVTDHLTERLNLEGALTLPIASPSSVYSEPKQVKPAKKNRLTTGSQNIRLAAKKNHQNDVTTMSNNLMFRSMFFMNEEARHFLAPPIQLSTTDGEYFTRKTGNPNLNTHHQQQQQQAVAALANHDSSSSVEKPLQPPKARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLSTHLLLHSSERPYKCLECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQKRHLTTHIKFHSGERPYSCSVCGETFSREEHLVMHSRFHGGTQPFVCPDCGAAFLRKFELVNHERQHGRIPESCPACGKEFLQRRTLLVHVRNCGLNSSTPVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAATLKQSVQGVSNGIANVQNHHQAQHQANTVANKKSHYCGDCGRGFTQKHGLQQHHIKYPNATCKDKPFSCQKCGKSFMQKNHLVLHERQHMDPPPSRNRNPTTSAVQSIQHLQSEQVGLQPTPLHASILGLQPIRHIQSSGSQPQLLRHHPSEAHSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305888;
90% Identity: iTF_01305888;
80% Identity: -