Basic Information

Insect: Periphyllus acericola
Gene Symbol: -
Assembly: GCA_949715065.1
Location: OX454272.1:9192422-9194572[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.6e-06 0.00022 22.0 2.7 1 23 60 82 60 82 0.98

2 8 8.4e-05 0.012 16.6 0.7 1 23 88 110 88 110 0.93

3 8 1.1e-06 0.00016 22.5 0.5 1 23 116 140 116 140 0.95

4 8 1.7e-06 0.00024 21.9 2.4 1 23 146 168 146 168 0.98

5 8 2.7e-05 0.0038 18.2 7.8 1 23 174 196 174 196 0.99

6 8 9.3e-06 0.0013 19.6 0.6 1 23 202 224 202 224 0.97

7 8 1.8e-07 2.6e-05 25.0 1.1 1 23 230 252 230 252 0.98

8 8 6.7e-05 0.0095 16.9 0.7 1 23 260 282 260 282 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.6e-06	0.00022	22.0	2.7	1	23	60	82	60	82	0.98
2	8	8.4e-05	0.012	16.6	0.7	1	23	88	110	88	110	0.93
3	8	1.1e-06	0.00016	22.5	0.5	1	23	116	140	116	140	0.95
4	8	1.7e-06	0.00024	21.9	2.4	1	23	146	168	146	168	0.98
5	8	2.7e-05	0.0038	18.2	7.8	1	23	174	196	174	196	0.99
6	8	9.3e-06	0.0013	19.6	0.6	1	23	202	224	202	224	0.97
7	8	1.8e-07	2.6e-05	25.0	1.1	1	23	230	252	230	252	0.98
8	8	6.7e-05	0.0095	16.9	0.7	1	23	260	282	260	282	0.99

Sequence Information

Coding Sequence: ATGACGTCCGCTTCGAACGCGTCCGAGGGTTCCGCTCGTGATATCGTCAGCTCCGAGGGTTCCGCTCGTGATATCGTCAGCTCCGAGGGTACGATGCAAACGGATCGGAATCCAACGGCCGGTCAAACATGCGCCGGGGACGAGTCTGACGACGAATTGCACTCTGGAGTAAAACCCTATAAATGTCCATTTTGTGAAAAATCATTTGCTAGGTCTACAAGTTTATATAAACACAAACTGAGGCATATATGTGATAAAGAGTTTGAGTGTTTAACTTGTCAGAAAACATTTACAGAAATGTCAGAATTAAATCGACACAATGTTATACACACAGGAATAAAACCATTTCCATGTGATTTCGATTCGTGTGAAAAGAGTTTTGCTCGGCCTTCAGATTTAAAAAGACATCAGAAATTGCATTCTGGTATCACACCATATAGTTGTGATATTTGTAAAAAagcattttacaataaattcgATTTGTTGAGACACAAAAAAATGCATACTGGTGAAAAAGAATATGAATGTAagatttgttttaaacattttactcatCAATATTCAATGTTTATTCACCAGAGAACACATTCTGGAGAAAAACCATTTGTGTGTGAAATTTGTAAGCGGTCTTTTGCCTATGAGTCTTCTTTAATTTCACATAAAACAAGTCACACTGGAGATAGATCATTTAAATGTGAATTTTGTCCAAGATCATTTGCCAATGCGTCTAATTtatcaaaacacaaaaaaattcaTATCGATCAAAAACCAATGCCATATGAGTGTGACTATTGCAACGagaaatttgataatttacttGAAATGTATAACCATATGTCAACCCATTGGAACAATCTGAATGACGTTTTTGCTCATGAAAATCGTATAGACAATACTATTTAA
Protein Sequence: MTSASNASEGSARDIVSSEGSARDIVSSEGTMQTDRNPTAGQTCAGDESDDELHSGVKPYKCPFCEKSFARSTSLYKHKLRHICDKEFECLTCQKTFTEMSELNRHNVIHTGIKPFPCDFDSCEKSFARPSDLKRHQKLHSGITPYSCDICKKAFYNKFDLLRHKKMHTGEKEYECKICFKHFTHQYSMFIHQRTHSGEKPFVCEICKRSFAYESSLISHKTSHTGDRSFKCEFCPRSFANASNLSKHKKIHIDQKPMPYECDYCNEKFDNLLEMYNHMSTHWNNLNDVFAHENRIDNTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -