Basic Information

Insect: Periphyllus acericola
Gene Symbol: su(Hw)
Assembly: GCA_949715065.1
Location: OX454265.1:32187485-32190264[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00012 0.017 16.1 1.1 1 23 99 121 99 121 0.95

2 13 0.0001 0.014 16.4 0.6 1 23 159 182 159 182 0.97

3 13 0.024 3.3 8.9 0.9 2 23 189 210 188 210 0.95

4 13 2.2e-05 0.0031 18.4 1.5 1 19 217 235 217 238 0.95

5 13 2.4e-08 3.4e-06 27.8 0.3 1 23 249 271 249 271 0.97

6 13 7e-06 0.001 20.0 0.4 1 23 281 303 281 303 0.98

7 13 1.4e-06 0.0002 22.2 0.5 1 23 309 331 309 331 0.99

8 13 9.4e-05 0.013 16.4 0.8 1 23 337 359 337 359 0.99

9 13 9.3e-05 0.013 16.5 3.3 1 23 365 387 365 387 0.95

10 13 4.4e-07 6.3e-05 23.8 1.6 1 23 393 416 393 416 0.97

11 13 0.019 2.6 9.2 0.8 1 23 422 444 422 444 0.97

12 13 2e-06 0.00028 21.7 0.7 1 23 450 472 450 472 0.96

13 13 9.9e-07 0.00014 22.7 1.3 3 23 480 501 479 501 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00012	0.017	16.1	1.1	1	23	99	121	99	121	0.95
2	13	0.0001	0.014	16.4	0.6	1	23	159	182	159	182	0.97
3	13	0.024	3.3	8.9	0.9	2	23	189	210	188	210	0.95
4	13	2.2e-05	0.0031	18.4	1.5	1	19	217	235	217	238	0.95
5	13	2.4e-08	3.4e-06	27.8	0.3	1	23	249	271	249	271	0.97
6	13	7e-06	0.001	20.0	0.4	1	23	281	303	281	303	0.98
7	13	1.4e-06	0.0002	22.2	0.5	1	23	309	331	309	331	0.99
8	13	9.4e-05	0.013	16.4	0.8	1	23	337	359	337	359	0.99
9	13	9.3e-05	0.013	16.5	3.3	1	23	365	387	365	387	0.95
10	13	4.4e-07	6.3e-05	23.8	1.6	1	23	393	416	393	416	0.97
11	13	0.019	2.6	9.2	0.8	1	23	422	444	422	444	0.97
12	13	2e-06	0.00028	21.7	0.7	1	23	450	472	450	472	0.96
13	13	9.9e-07	0.00014	22.7	1.3	3	23	480	501	479	501	0.97

Sequence Information

Coding Sequence: ATGGAAACGCCACCAAAAAATCCACCGAGAAAACGTGGTCGACCACGAGTAATCAAAGAAGAAAAACACAGCCCTAAACCTGAAGATTTAGAagaaatgttacaaaatattgatGATGAACCTATTGATGATTTTGATTACATTCCAAATGGAATGCCGGACTATTTActtgttaaaaataagaaaaatattaacaataatgaaGATGTTTATGACTTTGATGTTGAGAAGGAAGATGGTCCTggaataaaaaatataaaaactgaagAAAAGCCTGAATTAGAACAGTTGGAACATGCTTGCGATATATGTCCAAGAACATTTAAGACAATTCCTGGTTTAAAAAGACATAAAACTTCACATGACCGCAAACCTCGGGAAAATAATGtgcgCAATGAAGaaacaatgaaaaaagaaaTGCTTAGTTGTGATTGTTGTGGAGAAGATTTAGCTACAGCTCATACGaGTGGTGATTTTGAATGTTTCGACTGTGGaaactttttcaaattaaaagctAATATGGAACGTCACCAACTGATGGTACATTGTTATGATGATGTTTTAAACTGTCCAAGTTGTGATTTTAATTGTGCGGACAAAGAAACTTTATCTGAACATTTGTATTCCCATTcagGAGCATCAAAACCCTATTCATGTCCTGTTTGTTTCACATCATTCAGTAGAAAATATCATCTTGTACGTCATAATATGCAAACTGGTTGTGATGGTTCAGAAAAACCAAAATTTCCATGTCAAGTCTGTGGAAAAGTTTTTAACCGAAAAGATAATCTAAGAGAACATTTGCGTGCCCATGCTGGTCAAACTAAAAAGAAGCGTACTTATAACTGTGAATATTGCAATAAAGAGTTTGTTGGTTCAGCATTATTAACTGTTCATAGAAGAAGTCACTTagGTTATAGACCTTATCAATGTGATTTATGTCCAAAACGCTTTCCATCCAGTGGAGCCATGAAAAAACATCGTAGAATTCACACTGGTGAACGACCATATGAATGTCAACAGtGTTTTGCTAAATTTGCGGCCAAGGAAACTTTAAACCGTCATATTAAAACACATACTGCACTTAAACCACATTCTTGTGGATTTTGTGGAAAAACTTTTATACAAATTTCACAACTGAGAGCCCATTTGTTCCATCACACAGGTGAAAATGGTTTTACTTGTGACACATGTGGAAAGTCATTTAATCGTCGTTCTCGTTTAACACTCCATATTAGATATGTACATGAAGGAGCTGAGCCATTTATGTGTACTGTATGCAACAAAGCTTTACTGCGAAAAGAAGATGTTCAGCGACATCATATTGTTCATTCTGGCGTAAAAGCTCATGCATGTCCCATTTGTGAAAAGCGATTTGCTATGAAATCatctttaaaaattcatttattaACACATACTAAGGAACCACCACGTGCATGTGATGAATGTGGTCGGGCTTTTATTCGCCAAGATTGCCTATTGCGTCACATGCGTTCTAAACATAGAGATATGTTAGCTGAGATCATGGCtgatgctgaaaaaaaaaaactagaagcTCAACTATTGGgaatggtgaaaaaaaatgaagataatcaaaacGATGTTGATGAAAATGTTGGTGATGTGGACAAAGATGGGGATGAAGACGAAGAAGGAAGCATTGATGAATTAGAAGACAATGATAGTACTACAAGTGAAGAATCTAATCAGAATAACACATTGGCTGATTCGCTTATGGAATTATTAACAGTACTGGTTGATGAAAGTACACTCAAAGAGTTTGGTTGGCCAGATATGAGCGTTGATCATTTAATTGAATCTGTGATAAAGAGATGTGGACACACACCAGTGGCAACTGATGACGTTTCATACATGACTAGACTTAGAGATAACTCTAAgcaattgttttcaattattattgatgattcAGCTATTCAAACACTACTTAGCAATCAAACAATCGAAGAAGTTATTGAACATGTGTTGAAATTGGCTAAagcttaa
Protein Sequence: METPPKNPPRKRGRPRVIKEEKHSPKPEDLEEMLQNIDDEPIDDFDYIPNGMPDYLLVKNKKNINNNEDVYDFDVEKEDGPGIKNIKTEEKPELEQLEHACDICPRTFKTIPGLKRHKTSHDRKPRENNVRNEETMKKEMLSCDCCGEDLATAHTSGDFECFDCGNFFKLKANMERHQLMVHCYDDVLNCPSCDFNCADKETLSEHLYSHSGASKPYSCPVCFTSFSRKYHLVRHNMQTGCDGSEKPKFPCQVCGKVFNRKDNLREHLRAHAGQTKKKRTYNCEYCNKEFVGSALLTVHRRSHLGYRPYQCDLCPKRFPSSGAMKKHRRIHTGERPYECQQCFAKFAAKETLNRHIKTHTALKPHSCGFCGKTFIQISQLRAHLFHHTGENGFTCDTCGKSFNRRSRLTLHIRYVHEGAEPFMCTVCNKALLRKEDVQRHHIVHSGVKAHACPICEKRFAMKSSLKIHLLTHTKEPPRACDECGRAFIRQDCLLRHMRSKHRDMLAEIMADAEKKKLEAQLLGMVKKNEDNQNDVDENVGDVDKDGDEDEEGSIDELEDNDSTTSEESNQNNTLADSLMELLTVLVDESTLKEFGWPDMSVDHLIESVIKRCGHTPVATDDVSYMTRLRDNSKQLFSIIIDDSAIQTLLSNQTIEEVIEHVLKLAKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167898;
90% Identity: iTF_01346613;
80% Identity: -