Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0085 6.1 7.5 1.6 16 38 114 133 104 137 0.85

2 7 0.034 25 5.6 1.7 1 30 128 156 128 163 0.79

3 7 0.0007 0.5 11.0 0.7 18 39 172 190 160 197 0.89

4 7 0.0004 0.29 11.7 0.2 18 40 200 219 191 222 0.89

5 7 0.18 1.3e+02 3.2 0.4 18 29 228 239 223 250 0.77

6 7 1.3 9.1e+02 0.5 1.1 18 34 256 269 242 277 0.78

7 7 5.1e-05 0.037 14.6 2.1 6 44 273 307 272 307 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0085	6.1	7.5	1.6	16	38	114	133	104	137	0.85
2	7	0.034	25	5.6	1.7	1	30	128	156	128	163	0.79
3	7	0.0007	0.5	11.0	0.7	18	39	172	190	160	197	0.89
4	7	0.0004	0.29	11.7	0.2	18	40	200	219	191	222	0.89
5	7	0.18	1.3e+02	3.2	0.4	18	29	228	239	223	250	0.77
6	7	1.3	9.1e+02	0.5	1.1	18	34	256	269	242	277	0.78
7	7	5.1e-05	0.037	14.6	2.1	6	44	273	307	272	307	0.89

Coding Sequence: ATGGACCGTGTCGAAGTGAAGTGTCCGCCGCAAACTGCCTGTTATATTTCCGATAAAATGTCCGACACTGTCAAAACGGAGTTCGATGCCCAAGACCAAATCTACAAGAGCAATTGTGTCGAAGATGATATTTCTCTTAACTCAAGTGACATTCTTCATGTGGGCTTTTTGAACACTGGATTGCCATTTAAACTACCAGAAAAGGTGGAAAGTCAGACAAAGACAATTGCTCCAAAAAAAGAGACTATACATGAACAACAAACTGTATGTCAAAATGATCATTTGATGAACAATATTGCTGCATCAATGTATtccaaaaaattacaatactatgAAAGCTTACTTGAATGCAGTTTTTGCtcgaaaatgttttcaaacaaatcCAATCTACGcaaacattacaaaatacatactGAAAATCGATCATTTGCGTGTGACATTTGTGATAAAACATTTGTTGAAAAGCTCACCTTGCGTAATCACTGTAAACTACACACTGGTGAAAGGCCTTTCGAGTGTGATATTTGTGGGAAAACATTTGTGGAAACTAAAACCTTGCGCAGGCACTTTAAAGTACACACGGGTGAAAGACCATATGAATGTGACGTGTGTGGAAAAACGTTTGCTGCAACATCCAATTTGCGTAGTCATTATAGAACGCATACTGGTGAAAGACCATACGAATGTGATATTTGTAGTAAaacatttgttgaaaaaaagaCTTTTAGTGATCACCATAGAACGCACACTGGTGAAAGACCTTACATATGTGATGTTTGTGGTAGATCATTTACCCAAAAAACAACATTGTCTGTACATTATAGGACGCACACCGATGAAAAACCATACAAATGCGGAATTTGTGAAATGTCATTCAAAGATGGCAGCAACTTTAGAAGACATACTAAAAGAAAACACAACAGATAA
Protein Sequence: MDRVEVKCPPQTACYISDKMSDTVKTEFDAQDQIYKSNCVEDDISLNSSDILHVGFLNTGLPFKLPEKVESQTKTIAPKKETIHEQQTVCQNDHLMNNIAASMYSKKLQYYESLLECSFCSKMFSNKSNLRKHYKIHTENRSFACDICDKTFVEKLTLRNHCKLHTGERPFECDICGKTFVETKTLRRHFKVHTGERPYECDVCGKTFAATSNLRSHYRTHTGERPYECDICSKTFVEKKTFSDHHRTHTGERPYICDVCGRSFTQKTTLSVHYRTHTDEKPYKCGICEMSFKDGSNFRRHTKRKHNR

Sequence clustering based on sequence similarity using MMseqs2