Basic Information

Insect: Periphyllus acericola
Gene Symbol: lov_1
Assembly: GCA_949715065.1
Location: OX454265.1:29197362-29206244[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.7e-18 6.4e-15 55.1 0.0 1 44 548 591 548 592 0.96

2 2 5.2 2e+04 -4.0 0.1 15 22 721 728 715 728 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.7e-18	6.4e-15	55.1	0.0	1	44	548	591	548	592	0.96
2	2	5.2	2e+04	-4.0	0.1	15	22	721	728	715	728	0.73

Sequence Information

Coding Sequence: ATGGACACGCCGCAGTACAGTCTCCGGTGGAACAATCACCTAGTCCACATGATGGACGCCATCGAAGTGCTCCTGCAAAACGAAACCCTCGTGGACGTCACGCTGGTCTGTGAAAAGACTCAGTTTAAAGCCCACAAAGTCGTCTTATCCGCTTGCAGtccGTATTTTCAAAGGCTGTTCTCGGAGACGCCGTGTAAACATCCCGTGATCGTGCTTAAGGACCTTCCCGACTGGGAGATGAGAGCTATCATACACTTCATGTACAAAGGGGAGATTAACGTTGGCCAGGAACAGTTGCCGTTGTTGCTACAGGCTGCTGAAACGCTACAAATCCGCGGACTTGCCCACACCGAGCGCATACCGCTGTACGTCGACTCGCCCACCTCGTCGTCCACCACACCCACGGACATCcagccgccgccaccgcagCCGCCTCCGCCGTCGTCGCATCACCACGggggcggcggtggcggcagcggcggcggacACCACGGCGGCGGGAGTGCCGGCCACCAccacggcagcggcggcggggGCGGCGGCCACaatcaccaccatcaccaccactcCGGTGGCCACAGCCCCGGCGGCAAACCCCCGGGCGCCGCCGGCCACGAGCTGATGAACGGACTGAGCTCGCCCGGCAAGAGTCACCATCATCACCATCACCACCGTCACCGGAACGGCTCGCCGCAGAGCCCGCGCAACAAGTCGCAGGCGCCGCAGCCGCCACTGCCGCACCACCGGGACATGTCCGCCGGTCGCATGTCGCCGACCACCCGAATGTTCTTCCAAGcggccgccgcagccgccgcggccgccgcctcCGGCAACCCTTTCGAGCCGCCGCACATCCATCTGCCGCAAATACCGCACTTGCCGCCGATCACGTTCAACGACAGGAACTGCCCGTCGCCCACCCCTCGCAGGAAACAGGCGAGACCCAGGCGAAGATCTGGCGAAGCGATTGGCCCACAAGACCTGAGGAAAGCCCCCTCCCCGTCACATTTCAACAACAGCGTCGCCGAGAATTTGTGCATGAAAAAGTCACCCAACAATGAAAATATCAACAACGACAACATGCCGACGAATCTCAGTTGTAATAATAAGAGGCCTGATAGGACACCGTCACCGGCCGCCAATAAACAAATGAAGGTCGAAGTGGAAGAACAAGAAATGATTGGAGACTTGGGACAGAGTCAGCCGGTGGAGTTGACGGCCAACAGTGGCAacgtaaacaacaataataataataaccagtcGAGTAACAAAAAGAatcatcaccaccaccaccatcacaaCCACCACCAGCAGCAGAGGCATCCGGACTTCCCTTATTACGGTCCCGATCCCATGAGTATACCACTTAATCCACACgATCCGCATTTTGAAAACTCGTTGTTCCCGCCTTTCGGACCATTGTCATCGCTATCTCTTCAAGGACCTCCGCACAtgTTTCCAATAGATGCCCAATTCGGTTTATTTCCCGGCTTGGACGGCTGCAGGAACCCGCTGCTGAACGAACTGATCGAGCCGAGGTTCGACAATCCGCCGCCGAGCAAAAAGAAAAAGAAAATGTTCCCCGTAGGACGACCCAAAGGCCAGCACAGCGCTCCTCGGGGCGGTCCGCCCAGGTCGTGGACGAACGCCGAGCTCACGGAAGCGCTGCAGCACGTGTGGAACAAGAAGATGACCACGTCACAGGCGTCCCGGATCTTCGGGATACCGTACAACAGCCTGTTGATGTACGTGCGCGGTAAGTACGGCAAGTCGCTGAAACTGGAACAGTTGAAAAAAGAGTGTTTCGGCGACATCAACGGTCCGCTGGACCTGCTGCACTTCGGGTCGATATCGAACAACAACAATAGCAGCAAcaagaacaacaacaacaacagcaacagcaacaacaacaacaacagcggAAGCGGCAACAACAACAGCGGCGGCAAccacaacagcaacaacaacaacggcggcggcggcggcggcgggaccGGGAACGGGGCGACCGCGCCGTGCAACCCGCCGTCCGAGCCCGTGGACCTGATGCTCGGGCCGCCCGGCTTCAACCCGGCCGCGTTCCCGGCGCCCAACTTCTTCCCGGACTTCGGGTCCACGTTCCCGATGGGCATGGACATGATCCACCTGatccagcagcagcagcagatgTCGCTGTCCGAGGCGGAGAAGCAGCAGTACATGGGGCTGGACATGATGGGCGTGCAGCCGCAGTCGTCCGTCGTGCTGGACTACGCGATGAAGTCACCGGCGGCCATCCGTAGCAACTCGGAGCCACCGATGACCGgcagcggcagcggcggcgagGAGGCCATCGACGGCGAGGGATTGGCGGGCCTGGGCGACGGCGACGTGGACGGCGagtgcgacgacgacgacgacgacgaagacgacgacgggGTCGACGATTGCGGCgtcgacgacgaggacgacgaggacgaggacGAACCGGTGGCCGTGGACTTCTCGAAGGCCGGGACCGGTGGTTCCGGTGGCGGTGCTGGAGGCGCCGGAAGCGGTGCCGGCAGTGGCGGtagcggcgacggcgacggtgacGGTGACGGTGACGGTGACGGTGACGTGGACGGTGACGGCGACGGTgacgacgtcgacgacgacgaaagACTGAGTCCGGAAGTTGAGGAAAAGGACAAGGAACAAGACTGA
Protein Sequence: MDTPQYSLRWNNHLVHMMDAIEVLLQNETLVDVTLVCEKTQFKAHKVVLSACSPYFQRLFSETPCKHPVIVLKDLPDWEMRAIIHFMYKGEINVGQEQLPLLLQAAETLQIRGLAHTERIPLYVDSPTSSSTTPTDIQPPPPQPPPPSSHHHGGGGGGSGGGHHGGGSAGHHHGSGGGGGGHNHHHHHHSGGHSPGGKPPGAAGHELMNGLSSPGKSHHHHHHHRHRNGSPQSPRNKSQAPQPPLPHHRDMSAGRMSPTTRMFFQAAAAAAAAAASGNPFEPPHIHLPQIPHLPPITFNDRNCPSPTPRRKQARPRRRSGEAIGPQDLRKAPSPSHFNNSVAENLCMKKSPNNENINNDNMPTNLSCNNKRPDRTPSPAANKQMKVEVEEQEMIGDLGQSQPVELTANSGNVNNNNNNNQSSNKKNHHHHHHHNHHQQQRHPDFPYYGPDPMSIPLNPHDPHFENSLFPPFGPLSSLSLQGPPHMFPIDAQFGLFPGLDGCRNPLLNELIEPRFDNPPPSKKKKKMFPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKECFGDINGPLDLLHFGSISNNNNSSNKNNNNNSNSNNNNNSGSGNNNSGGNHNSNNNNGGGGGGGTGNGATAPCNPPSEPVDLMLGPPGFNPAAFPAPNFFPDFGSTFPMGMDMIHLIQQQQQMSLSEAEKQQYMGLDMMGVQPQSSVVLDYAMKSPAAIRSNSEPPMTGSGSGGEEAIDGEGLAGLGDGDVDGECDDDDDDEDDDGVDDCGVDDEDDEDEDEPVAVDFSKAGTGGSGGGAGGAGSGAGSGGSGDGDGDGDGDGDGDVDGDGDGDDVDDDERLSPEVEEKDKEQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01346990;
90% Identity: iTF_01169993;
80% Identity: iTF_01169993;