Pmec000388.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- nfxl1
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000001.1:2546760-2551362[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1 2.3e+04 -3.3 1.1 15 19 126 130 125 130 0.81 2 20 0.31 6.4e+03 -1.5 0.4 4 10 161 167 160 167 0.92 3 20 6e-08 0.0012 19.9 15.1 1 18 175 191 175 192 0.98 4 20 1.5e-08 0.00031 21.9 12.2 1 19 229 246 229 246 0.97 5 20 0.00051 10 7.4 13.1 1 19 281 300 281 300 0.93 6 20 0.0001 2.1 9.6 7.5 1 18 336 353 336 354 0.97 7 20 0.0015 31 5.9 8.3 1 12 388 399 388 399 0.94 8 20 2 4.1e+04 -4.1 1.3 6 10 409 413 409 413 0.96 9 20 8.5e-08 0.0017 19.4 12.5 1 18 419 436 419 437 0.92 10 20 1.8 3.7e+04 -4.0 1.3 6 10 466 470 465 470 0.76 11 20 0.00011 2.3 9.5 9.8 9 19 485 495 483 495 0.90 12 20 0.021 4.4e+02 2.2 6.7 1 12 505 515 505 515 0.95 13 20 0.92 1.9e+04 -3.0 5.8 14 18 547 551 547 552 0.89 14 20 0.0039 79 4.6 8.9 1 12 588 599 578 599 0.82 15 20 2 4.1e+04 -4.2 3.5 6 10 616 620 612 620 0.73 16 20 0.00025 5 8.4 15.0 3 19 629 645 628 645 0.92 17 20 2 4.1e+04 -6.6 3.4 9 13 651 655 651 655 0.71 18 20 1.4e-05 0.29 12.3 12.4 1 16 690 704 690 710 0.90 19 20 0.42 8.6e+03 -2.0 0.9 5 10 739 744 739 744 0.94 20 20 1.1 2.3e+04 -3.3 1.1 1 4 872 875 872 875 0.97
Sequence Information
- Coding Sequence
- atgcaaaagttCAAACGAGCCGCAGCCCAAAATAAGATAGCGATTAATAAGCATTTAGAAGCAAATGCCTATCTTGAGTCGTCTAGCGAAGAAGAAGATGATGCAAACGAGGAAGATATTCAGAACGCGGTCGGAAAAGTTTTATCCGCCTACCAAGGAAAGGAAGCGGACGCCGAAAAGATTTTATCGTATTTAATTAACGTTTTCCAATCTGGCAGCGCCGTGTGTTTAATATGCATTTCGACTGTGAAAAAAGCAGATCCGATCTGGAACTGCAGCAAATGTTTCGCTTTTCTACACTTGTCGTGCATCTTGCACTGGATACAAGACAGTCTGAATGTTAAACGCGAGAAAGGCATCGAACAAACTTGGGCATGtCCGAAATGCCGTATGGAATATGGACAGGACAAAATTCCTCGTAAATACACATGCTTCTGCGGAAAGGTTGTAGATCCTTCTTATCAACCATGGAATATTCCGCATTCTTGCGGAGATACCTGCGGCAAACTATTGCAACCAGAATGCGGGCACAAATGCGTTCTACTTTGTCATCCTGGGCCATGTCCACCGTGCGCAAAAATGGTATTGGTTAAATGTTACTGTGGCAAGCAAACGCCGCAGCCTCGACGATGCAACGCCAAAGATTGGAGTTGCGACACCGTGTGCACCAAAAACTACTCGTCTTGCGGCCACGCGTGCAAGCAAATTTGCCACAAGGGAGATTGCCTTCCTTGTTCGGAGACGTTGCTTCTCGATTGTCGTTGCAAAAGCAACGATGAGATCAAGAAGTGTTCCGAAGGCGGGTGGAGATGCGACAAACGTTGCGACAGGCTGTTGTCGTGTAACGTACACGTTTGCCAAGGCACGTGTCACTTGCCCGGCGACTGTGGAACGTGTCCTTTGGAAAAGAACAGAACGTGTCCGTGTGGAAAGAAACGATACAACATTTCCTGCAAGCAGGAACAGTCGCCGATATGCGGAGACACGTGCGGCAAATTGCTCGATTGCGGTTCGCACTTTTGTAACATGAGATGTCACGCGGACCGGTGCGGTCAATGTTTGGAGGTGGTGACGAAGTCGTGTCGTTGCGGCAGCTATCAGAAGGAAATCGCTTGCGTCAAAGAGTTTCATTGCAACAAGAAATGCACGCAAATGCGTCTCTGCGGACGACACTCGTGCAACAAGAAGTGTTGCGACTGTTTCATTAAGAAAACGTACAACGTGTGCGAGAAGATATGCGAGAACCCGTTGAATTGTCGTAAGCACAAGTGCTCGGCTCCGTGTCACAGCGGTCCGTGTTACCCGTGCGCAAGGACCGACGTTATTCAGTGCAGATGCGGACACAACAAGAGAACGGTACCGTGCGGCACGGTGAAGAGGATCAGGCCTCCTCCTTGCAACAAGCCTTGCAAGATACCGCCGATCTGTCATCATCCAAAGAGAGAAACTCACAAGTGTCATCAGGGTCCGTGTCCGCCTTGCAAGAAGATTTGTAATTTGACGTACAAACGATGCGGACATTCTTGCGTTACCATTTGCCATACGAAAGTCTGGGTAAAGGAGAATAAGAGCGACGCGAATACTCAACCCGCAGGACCGTGGGACGTGCGAAAGGAAGTGATGCAGCTCAAGACCCTGCCTTGTCCGCCTTGCGAAATTTCGGTACCGATTACGTGTTTCGGGGATCACGAGACGACTCCGTGGCCTTGCCACATGGCCAAGCCTTTTTCCTGCGGAAGACTCTGCGGCAGAACGTTGTCGTGTCAGAATCACACTTGCGAGCTAACGTGTCACAGAGTCCAGACTTCGGAAGGTAACAAGAACGGCGCTACTCCGTGCATGGAGTGCGAAAGGCCGTGCTCGTTTGCACGGCCAAAAGGCTGCACGCATTCGTGTCCAAGGCTGTGTCATTCGGAGCCTTGTAAACCATGTCAGCAGTTAGTTAAAATTCCATGTCACTGCGGCATAGTCTCGTTGTATCGAAGATGCTCCGAATTAACATCGGCTACGGTACAACAACGTGACCAATTGTTCAAATGCGGTAATCAGTGTCccaaaaatTATCCTTGCGGGCATCGTTGTACAGCCGACTGTCATCCAGGACCGTGTAAAAACGGAGACGCGTGCAATAAGAAAGTCAAACTGTTTTGTTCGTGCAGACGTATaaaaaaagactttttttGCTCAACAGTGCAGAAGCAAAAGGTTGAAGTAAAATGCGACGAAGTTTGCGAACGATTGAAAAACGAGAAAAATCAAGCGGAAGCTGCATTGTTAGAACGGAAACGTCAAGCGGAAGAATTGCGTAATcaagaagaaatagaaaaatttgagaGGAAATTCAAACCTCGTCGTAAGGGAAAAGACAAGTTCGATAAGAAACAGTCGCAGAAAGAAACCAACAGTAATTACTGGAAATACTGCGTTTTAGCCATTCTAATATGTTCGCGAGTCGGGTCTGTCGACGAGCCTACAGAGAGTAGTAGACACGATTCCGAGTTGAAATGTGATCTTGTTTCGCCATCGTCGAGAGAAATGAACTGCCATTTAAAAACCAAGCGACACCAAACACTCACTTCATCTACTGTGAGCCGACGTTGTGCCGTTTCTGCTTGCGGCAGGCATGTAACTTTACTCTGTTCAGCGTTACCCTAG
- Protein Sequence
- MQKFKRAAAQNKIAINKHLEANAYLESSSEEEDDANEEDIQNAVGKVLSAYQGKEADAEKILSYLINVFQSGSAVCLICISTVKKADPIWNCSKCFAFLHLSCILHWIQDSLNVKREKGIEQTWACPKCRMEYGQDKIPRKYTCFCGKVVDPSYQPWNIPHSCGDTCGKLLQPECGHKCVLLCHPGPCPPCAKMVLVKCYCGKQTPQPRRCNAKDWSCDTVCTKNYSSCGHACKQICHKGDCLPCSETLLLDCRCKSNDEIKKCSEGGWRCDKRCDRLLSCNVHVCQGTCHLPGDCGTCPLEKNRTCPCGKKRYNISCKQEQSPICGDTCGKLLDCGSHFCNMRCHADRCGQCLEVVTKSCRCGSYQKEIACVKEFHCNKKCTQMRLCGRHSCNKKCCDCFIKKTYNVCEKICENPLNCRKHKCSAPCHSGPCYPCARTDVIQCRCGHNKRTVPCGTVKRIRPPPCNKPCKIPPICHHPKRETHKCHQGPCPPCKKICNLTYKRCGHSCVTICHTKVWVKENKSDANTQPAGPWDVRKEVMQLKTLPCPPCEISVPITCFGDHETTPWPCHMAKPFSCGRLCGRTLSCQNHTCELTCHRVQTSEGNKNGATPCMECERPCSFARPKGCTHSCPRLCHSEPCKPCQQLVKIPCHCGIVSLYRRCSELTSATVQQRDQLFKCGNQCPKNYPCGHRCTADCHPGPCKNGDACNKKVKLFCSCRRIKKDFFCSTVQKQKVEVKCDEVCERLKNEKNQAEAALLERKRQAEELRNQEEIEKFERKFKPRRKGKDKFDKKQSQKETNSNYWKYCVLAILICSRVGSVDEPTESSRHDSELKCDLVSPSSREMNCHLKTKRHQTLTSSTVSRRCAVSACGRHVTLLCSALP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -