Basic Information

Insect: Perdita meconis
Gene Symbol: -
Assembly: GCA_030770465.2
Location: JASKOS020000012.1:7786883-7788571[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0035 0.61 11.8 0.5 3 23 297 318 296 318 0.97

2 9 0.00066 0.11 14.1 2.4 1 23 322 344 322 344 0.99

3 9 0.09 16 7.4 0.5 2 23 351 373 350 373 0.93

4 9 2.4e-05 0.0041 18.6 1.6 1 23 380 403 380 403 0.96

5 9 3.3 5.8e+02 2.4 0.1 1 12 408 419 408 422 0.84

6 9 0.00026 0.046 15.3 2.9 1 23 436 458 436 458 0.98

7 9 1.1e-06 0.0002 22.8 1.2 1 23 462 485 462 485 0.98

8 9 4.4 7.5e+02 2.1 4.4 1 23 489 511 489 511 0.92

9 9 0.00055 0.096 14.3 2.3 1 23 517 539 517 539 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0035	0.61	11.8	0.5	3	23	297	318	296	318	0.97
2	9	0.00066	0.11	14.1	2.4	1	23	322	344	322	344	0.99
3	9	0.09	16	7.4	0.5	2	23	351	373	350	373	0.93
4	9	2.4e-05	0.0041	18.6	1.6	1	23	380	403	380	403	0.96
5	9	3.3	5.8e+02	2.4	0.1	1	12	408	419	408	422	0.84
6	9	0.00026	0.046	15.3	2.9	1	23	436	458	436	458	0.98
7	9	1.1e-06	0.0002	22.8	1.2	1	23	462	485	462	485	0.98
8	9	4.4	7.5e+02	2.1	4.4	1	23	489	511	489	511	0.92
9	9	0.00055	0.096	14.3	2.3	1	23	517	539	517	539	0.98

Sequence Information

Coding Sequence: ATGTCGACGATCACGGAAACTGCCGTCACCCGAATTCCAGTTCAGCCACTATTTGTAGTCTGCCATGGAACTTCTGTTTTGGATCAAGAGGAAAGATCACGAACCCCGATTGAATCGAGATCTATAGTTGACGACGAAGACCAAAGCGTAATTAGTGACgttgaaagcaataaaaatgaacaatcGGTAGTAGAAGACGGAAACGATGATGATTTATCTAGCGACAATAATGACACCCACTTAAGTGAGATCAATCACTGTACACTACTGGATGTTAATAATGAAGGTTCATCACAGGGTACAGTTAGTAACGATTCATTGCCCGTCACGATTAGCAACTCACCAGCTCCTGTAGATTCTCCCATAGACGAAGTGAAGACTGCTTTAGTGCCAGTTAGGGATCCCATAACTAAAGAGATCAAGAATCAGTTGGTGCCATTTGAGATTAAGGACGAATCAGGATTGAACGTGATCAAAAGTGTTGTGATTCCTGTTAAGGGAGAAGACGGCTTACTGTCGTACGAAGTTAGGAAGGTTACTGTGCCCATCCAATCGAAGCTACAGTTACTGTTGAGTTCTTCGACAACCAGCTGTCAACCAAATCTACCGCAGACAAAAACTGAGCCGATAAAGATAGATGAGACACTACCAGACGAGACGAACGTAGAAGACAATTACAGTGTGAAATATCAGGAAGCAGAAGACAGCAAGAGCGAAAAGGATGCAGAAACAGAGGACAATACGGTTAGAAATGATGCAGTGCAGAAGGAAGTAAAGAAAGATGATACGATAGAAGACAAAGAAGCAAATGTAAAAGATGAGTCAGAAAACGAAGGACCAAAAGCAGATGAGCCGTTGGAACGGATGCTGGGAAATACAGACAACATGTGCCCTTATTGCCAGAAAGTCATCGAAAATCGGAAACGACTGGGTCAGCATATTCGCAGGAATCACACAAAACCGTATCGTTGCGACAAATGTTACCACACTTACGTCTCGAAGGAAGCTTACGAGGTCCACGTGAAGACCCACGAGAAACCGTCGTACTTAGAGTGTCCGTTCTGTCGACAACGATACAAACGCATGGGTGCATTAAGGTTTCACCAGATCCGTGTGCACAGCACCATAGAGCCACAGTTCGAATGCGACTATTGCAAGAAACGTTTCAAACTGAAAAACGACCTGACCATGCACATCGACAGGCTCCACACGGGCGACAAACACGTATGTAGATTCTGCGGTAAAAACGTGAGGAACATAATGAACCACGAATGGCAGCACAAAAAGTCAGGCAGGCCGTATCCGTTCCAGTGTCATCTCTGTCCCAGCAAGTTCCGAAAATCGAACGGTCTAGAGAATCATCTACAGAGACACAAAAGCGGCTTCAAGTGTAACAAGTGTGGCGAAATTTTTTCCCGTCCATCGAGATTGATCAGTCACAGACAGACTAAGCACAAGCCCGCTTTCTTCTGCACTATCTGCAAGCAGGAATTCAATTGCAGAGAGAAGTTCTATCTGCACGTGATCCGACATGCGAAACTCAGGCCCTACAATTGCGACGTTTGCGACGCGGACTTCTTTCACAGAACAACCCTCGTCAAGCATCGGAATACTCATCCGGGCCCTTTGCCTCCTTTGAAGACTTCGAAAATCGCGCACTTAGCTAAGAAAGTCTTACAGCATTATTAA
Protein Sequence: MSTITETAVTRIPVQPLFVVCHGTSVLDQEERSRTPIESRSIVDDEDQSVISDVESNKNEQSVVEDGNDDDLSSDNNDTHLSEINHCTLLDVNNEGSSQGTVSNDSLPVTISNSPAPVDSPIDEVKTALVPVRDPITKEIKNQLVPFEIKDESGLNVIKSVVIPVKGEDGLLSYEVRKVTVPIQSKLQLLLSSSTTSCQPNLPQTKTEPIKIDETLPDETNVEDNYSVKYQEAEDSKSEKDAETEDNTVRNDAVQKEVKKDDTIEDKEANVKDESENEGPKADEPLERMLGNTDNMCPYCQKVIENRKRLGQHIRRNHTKPYRCDKCYHTYVSKEAYEVHVKTHEKPSYLECPFCRQRYKRMGALRFHQIRVHSTIEPQFECDYCKKRFKLKNDLTMHIDRLHTGDKHVCRFCGKNVRNIMNHEWQHKKSGRPYPFQCHLCPSKFRKSNGLENHLQRHKSGFKCNKCGEIFSRPSRLISHRQTKHKPAFFCTICKQEFNCREKFYLHVIRHAKLRPYNCDVCDADFFHRTTLVKHRNTHPGPLPPLKTSKIAHLAKKVLQHY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -