Basic Information

Insect: Perdita meconis
Gene Symbol: -
Assembly: GCA_030770465.2
Location: JASKOS020000005.1:8279929-8288535[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.057 10 8.0 0.2 1 20 109 128 109 130 0.94

2 21 7.8 1.4e+03 1.3 1.0 3 20 141 158 139 160 0.89

3 21 0.0022 0.39 12.4 4.2 1 23 175 198 175 198 0.92

4 21 0.0011 0.2 13.3 1.9 1 23 443 466 443 466 0.94

5 21 2.1 3.6e+02 3.1 1.5 5 23 473 492 472 492 0.94

6 21 0.013 2.2 10.0 3.0 2 23 547 569 547 569 0.96

7 21 0.0011 0.2 13.3 1.6 1 22 669 690 669 690 0.96

8 21 0.00028 0.048 15.3 0.3 3 23 699 720 698 720 0.94

9 21 0.013 2.2 10.0 3.5 1 23 730 753 730 753 0.95

10 21 0.93 1.6e+02 4.2 0.1 2 19 782 799 781 802 0.88

11 21 0.065 11 7.8 4.9 1 23 809 832 809 832 0.91

12 21 0.0049 0.85 11.3 3.3 1 23 843 866 843 866 0.93

13 21 0.0036 0.62 11.8 0.1 1 20 912 931 912 933 0.93

14 21 0.00023 0.039 15.5 3.5 1 23 940 963 940 963 0.95

15 21 4.6 8e+02 2.0 0.3 2 20 1034 1052 1033 1054 0.89

16 21 0.0023 0.39 12.4 2.5 1 23 1061 1083 1061 1083 0.97

17 21 0.0097 1.7 10.4 3.8 1 23 1093 1116 1093 1116 0.94

18 21 0.042 7.3 8.4 0.1 2 20 1208 1226 1207 1232 0.88

19 21 0.0062 1.1 11.0 1.4 1 23 1235 1257 1235 1257 0.96

20 21 0.0016 0.29 12.8 1.7 1 23 1268 1291 1268 1291 0.92

21 21 0.12 22 6.9 0.0 3 23 1389 1410 1387 1410 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.057	10	8.0	0.2	1	20	109	128	109	130	0.94
2	21	7.8	1.4e+03	1.3	1.0	3	20	141	158	139	160	0.89
3	21	0.0022	0.39	12.4	4.2	1	23	175	198	175	198	0.92
4	21	0.0011	0.2	13.3	1.9	1	23	443	466	443	466	0.94
5	21	2.1	3.6e+02	3.1	1.5	5	23	473	492	472	492	0.94
6	21	0.013	2.2	10.0	3.0	2	23	547	569	547	569	0.96
7	21	0.0011	0.2	13.3	1.6	1	22	669	690	669	690	0.96
8	21	0.00028	0.048	15.3	0.3	3	23	699	720	698	720	0.94
9	21	0.013	2.2	10.0	3.5	1	23	730	753	730	753	0.95
10	21	0.93	1.6e+02	4.2	0.1	2	19	782	799	781	802	0.88
11	21	0.065	11	7.8	4.9	1	23	809	832	809	832	0.91
12	21	0.0049	0.85	11.3	3.3	1	23	843	866	843	866	0.93
13	21	0.0036	0.62	11.8	0.1	1	20	912	931	912	933	0.93
14	21	0.00023	0.039	15.5	3.5	1	23	940	963	940	963	0.95
15	21	4.6	8e+02	2.0	0.3	2	20	1034	1052	1033	1054	0.89
16	21	0.0023	0.39	12.4	2.5	1	23	1061	1083	1061	1083	0.97
17	21	0.0097	1.7	10.4	3.8	1	23	1093	1116	1093	1116	0.94
18	21	0.042	7.3	8.4	0.1	2	20	1208	1226	1207	1232	0.88
19	21	0.0062	1.1	11.0	1.4	1	23	1235	1257	1235	1257	0.96
20	21	0.0016	0.29	12.8	1.7	1	23	1268	1291	1268	1291	0.92
21	21	0.12	22	6.9	0.0	3	23	1389	1410	1387	1410	0.95

Sequence Information

Coding Sequence: ATGGCTCGTGTATTCGTATATGAACGTGCTGTCGATGCTGTGTCTGTGGACGTGACATCCAACGATAACTTAAATTATGCCGAAAATGGAATAGCGATCAAAGAAGAACCACTCGATCCAGACATCGATAAGCCCGCTGATTTGTTGCACACTGCTAACAAAGCCGTTGAACGTAAATTAGCAAAAGTtagaaagaaaaacgaaacCATTTCGTATAATTTACGTAACCTATCTTCCGTGGGTACTAACAAAAAGAGACGTAAAAATGTTACCGagactttgaaaaaaatcaaattgcgTTCGAGTCAGAAATTCACCACGCATTTCGAATGCGACGTGTGCTATCTAACGTTTCAAGAGGAAAGTACACTGAGGCAGCATAAAGCGTCGAACCTTTTGGTAGATAAATCTGTTAGCTGTTGCGACATATGTAATGGAATGTTTGTCTCGCATGTTGTGATGAATAAACACAAAGAGTATTGTATATCGCCGCGAGATCAGAATCCTGATCGCAGACGTAAATTCATTTGTAATTTCTGCGAACGGAAATTCTCAACGAAGAACTATCTGCAATCTCATTTGTTTCATATTCATCAAAACTTGATATCGTCTACCGAAACCCTTACTAATAAGATAAAACAGAATGTGATAGTCGACATCGTCGATACTTGCAAAACGAACATTTGTCATATACCGGACAAACCGAAAGAGAATCAAACTAACACGAGTTTAAAAAGGATGAGACAGACTACACTTACAGAGTTTCTCCCACTTTTTAGCaagtattttgttaaaaaacaGGAAGAAGCTTCTACTAACGCTGACGAGATTTCTGTTACTACTAGTATCGCTATAAAAAATGGAGAACATGAAAGTTTGATAGATGTGTCATCTTCCAATGGTCTAGAAGAAACGGCGATGGACAACGAAACGTCTACGAAACGTCAATCCTTGACCGATAATAAACCATTTGTTCAAATACACGTGAATACCAACACGATGATATCGTTGTTAAGCAGCAAGATGAAAGAGGAAGACGGTCGTCAGTCTCTTGTGGTCGCCGCACCGTCTAAGGCATTTTACAACTTCAGGAGATCAAGGAGCGATTATAGACCATCGCCGTACGAACGCGACGGTGCACTCGCGAGACCAACCAGAGGGAGAAAGACGACAGAGTTATGggagaaagaaatgaaaactaGATTCAACTGTAAAGAGTGTGTGGTTCGTTTGGAGAGATGCGATGGTGTCATCAATGGTGGAAAACTGAAAACGAACGATCCTGAATGTTTCCGTGTAGAACAGAAATTGACTAAGAACAAAGTGTATAAGTGTAAAGTTTgcaagaaattgtttttttcgaaggaaaacaTGCAAGAGCATATTGACTTGTTTCACGTGGCTTACATGTCCAGCATTTGCAGTGCGCGTTTCACGTCTATGCGCAAGTTATTGCATCACTATTTACGTCAGCACGAAGTATTCAAGCGAAAAAAGTGTTGCGTGTGCTACGAAAAACTTGATTCATTAACTTTGACCCAGCATATGATTTTgcattgtattaaaattgtacGGTCGAAGCACGATAAAATGTTACTCGGTAACAAAACAAACTGCAACGAGTTTAAGAAACGTAATCGTTGCAAAGATTGTGGGAAACGATTTTGGTTAAAATCCTGTTTGATACAGCATCGACAGATATCTCACCGCACGAATGTCGCGGCCAAAAAGCCGCCGTCTCCTACCGTCGAGAAGCAAGTAACAAGTATCGCGGTGAATATCGAAGGTGACGAATGCGATTCAGATCTCTCGACGAACTATTATGATAGTAAGTCGAACATGAATACACCGCCCGCGAACACGAAAACCAAATCTCCTGTGAAAGATACAGCGTCGAGTAATCCTTACGATGGTGCGAACGCTGCGAATCAGAAGAGGTTGGTCACTGGGATAGCGTGCGTGAAGGGTTACCAAGTGGACGCGACTGCCAAGGATAAAATCAAATTCCCTTGTTCGATTTGCGACAAACAGTTTCAAACGTTCCAAAACTTGTGCATACACGAGCGCACCTTTAACAAACCCGCAGATAATCTGTGCACCATTTGCGGCACCGGGTTTAGCACCAAGAGGCTGTTGCAACTTCATTTGCTTGCGACGCACACACCCTCCTGCACGGAGAActacaaatatttctgctcATTCTGCAACCAAGGTTTCGTTAAGAAATCGAACGTTCAGATCCACGAACGACATTTCCATGCCAATCAAATCGTCGCGAATACCGTTGCGAGCGAGGTTCCTTCGAATATTTGGAACATGAACACCGTGAACACCGTGTGCACCGTGTGCACCGTGTGCAACATAGTGTTCGAGTCCTACGAGCGGTTCATCGAGCACAACATGTATTATTACAAAGGTCAAGTATTCACTTGCACGTTTTGCGGCAAAACGTTTCAAGGGATGTACATGCTCCACCATCACAACAAATTGATACACTATCCAGAGGACACGCGTAACGCGTACACTTACGCTTGCGACATCTGTAACGAAGGCTTCAATCAGGAATCTCATTTTCACGCGCACAAGTTGCACGTTCATTTCCACGAAGCGTCTTCGATGCAAAATTCTACCAGGTCTTTGCAAAGTTGCGCCGCCTACCAGGATCATAATTATGCAGTAACGACCGACGATGGTATTACTGCCAACGCAACCATAAACGTACCGATTATGACGTACTCTTGCGACATCTGTAGTCTGAGTTTTACCAACGAAAATGACCTTTCGATGCATGAGAAGGAATATTCCGCCGACGGGGACTTTCAGTGCGACAAATGCGGTAAGAAGTGTCGCTCTCCAACCTTTCTGATCAAACATCAGAGTTTGAATCACAGCGGCTCCGACGTTGGTAGCGGTTACAAATGTCGTTTCTGCGGAGAGATTTCGACGACGAATACAGCGATGGTGTGTCACGAGAAACACTTCCACAGGACCAATCTTCAGTTCGAAAGCACAGATAATGCGTCGGGACGATTGGACGCGAATCACAACGCTCCTACGGAAAATCTCGTTCCTCGAGCCGAAGACGAACTAAGTAAGTGTATCTGTTTAACTTGTGGCATGAGATTTCTAAACGAGATTAAGTTGAAGGAacatttattagaatattccGATATAGGCGTCTTCGTTTGTGACATTTGCCATAGGAGATTTGCAGAGAAGTATCGTTTAGAGGTGCATAAAACTAAACATTCGAGACTAAACCACGTTTTATCCGAACATCATTGTCCCATATGTCAAGAAGGATTTACCAGCGCTGCGCACGTTCGAACGCACGTTATGCATTTACACGGGTACGAAACCTTTTCGAGTGCCATCGCTAAATGCACCAACAATCCAACCGTTAATGCTAGGACTTCGATCGGTCCGTGCAAAAGCCATTGGATCGATAGCGTCCAAGAGACGAGCAAATTGGACCGATCGAACCAGAACAATGAAAATATGCGATCAAATTCATTGTTGAACGGGAAAGGAAAAAGCTCGACGCGCCTTAGTACGTCCGAGACACTAGACGATTCCGACATTTCCATCATTTCCGTCAACGAATCACACAAACATAAAGTAAAATGTTCCGATTGCGGTTTAGTGTTTAATAGTAGCCCTATTCTTGCAAGACATAAATTAAGATTCGTCAACCACGGAGACTTTGCGTGTCAACATTGCGATCGTAGATTTCCCACGCTGACAATATTGAACTCGCACCTAATTAAGCATTCTGCAGACATTGAAGAGCGTttcttaaaatacaaatgttcTTATTGCgacgaaaaattcaaaacccCTGTTTCTGTATATTCGCACACTGCTCACGTTCATGGTAGAAACAAATCAAAGGCTAAAAGTATTGGCATTAACGAACAAAGCAATAAAACTGATACGAACAGTTCGAAATTGTGTGAGAACGATACTCTCGATATCTCGGAAAGGGTGTTTACCGACGATGATTTGGAATGGCTTTTAACTGATGATACCAACTCCAAAGCTGTCGACGCGACGAATCTCAATGGAAggcaaaaaagaaaatcatcGATAGAGgtGACGCACGAGGATAGGATCGACGAATCGATAACGAGTCCGATGAAGTCGTACAAGAAGAATCCTATTGACTGCTTGATCTGCAACGCCACCTATGCCGACGAATTGGACTTGAAGATGCACTTGGAGAAAGTGCACTTCCCTCGTTCGTCTAGCGATAAAACTCCTGCCACAAGCatcgatattatcgatacTTCGTGTACGGCGGACGATTCCGATATAGTAGAGATTATTTGGGAAAAAAAGAGTAGCAATACTGCTAGTTCTGACAAGCACTTGGAACTTCACAGTATTTGCAAATCAGAAAATGAAGCGACAAACGGCAGTTGTTCGGTTCCATCGATCGAGCAGCAACCCATTGACAATAGCGACGTAGGGAAACTTAAAGTGAAATGGTTCGCGAAGATCACCGATTGA
Protein Sequence: MARVFVYERAVDAVSVDVTSNDNLNYAENGIAIKEEPLDPDIDKPADLLHTANKAVERKLAKVRKKNETISYNLRNLSSVGTNKKRRKNVTETLKKIKLRSSQKFTTHFECDVCYLTFQEESTLRQHKASNLLVDKSVSCCDICNGMFVSHVVMNKHKEYCISPRDQNPDRRRKFICNFCERKFSTKNYLQSHLFHIHQNLISSTETLTNKIKQNVIVDIVDTCKTNICHIPDKPKENQTNTSLKRMRQTTLTEFLPLFSKYFVKKQEEASTNADEISVTTSIAIKNGEHESLIDVSSSNGLEETAMDNETSTKRQSLTDNKPFVQIHVNTNTMISLLSSKMKEEDGRQSLVVAAPSKAFYNFRRSRSDYRPSPYERDGALARPTRGRKTTELWEKEMKTRFNCKECVVRLERCDGVINGGKLKTNDPECFRVEQKLTKNKVYKCKVCKKLFFSKENMQEHIDLFHVAYMSSICSARFTSMRKLLHHYLRQHEVFKRKKCCVCYEKLDSLTLTQHMILHCIKIVRSKHDKMLLGNKTNCNEFKKRNRCKDCGKRFWLKSCLIQHRQISHRTNVAAKKPPSPTVEKQVTSIAVNIEGDECDSDLSTNYYDSKSNMNTPPANTKTKSPVKDTASSNPYDGANAANQKRLVTGIACVKGYQVDATAKDKIKFPCSICDKQFQTFQNLCIHERTFNKPADNLCTICGTGFSTKRLLQLHLLATHTPSCTENYKYFCSFCNQGFVKKSNVQIHERHFHANQIVANTVASEVPSNIWNMNTVNTVCTVCTVCNIVFESYERFIEHNMYYYKGQVFTCTFCGKTFQGMYMLHHHNKLIHYPEDTRNAYTYACDICNEGFNQESHFHAHKLHVHFHEASSMQNSTRSLQSCAAYQDHNYAVTTDDGITANATINVPIMTYSCDICSLSFTNENDLSMHEKEYSADGDFQCDKCGKKCRSPTFLIKHQSLNHSGSDVGSGYKCRFCGEISTTNTAMVCHEKHFHRTNLQFESTDNASGRLDANHNAPTENLVPRAEDELSKCICLTCGMRFLNEIKLKEHLLEYSDIGVFVCDICHRRFAEKYRLEVHKTKHSRLNHVLSEHHCPICQEGFTSAAHVRTHVMHLHGYETFSSAIAKCTNNPTVNARTSIGPCKSHWIDSVQETSKLDRSNQNNENMRSNSLLNGKGKSSTRLSTSETLDDSDISIISVNESHKHKVKCSDCGLVFNSSPILARHKLRFVNHGDFACQHCDRRFPTLTILNSHLIKHSADIEERFLKYKCSYCDEKFKTPVSVYSHTAHVHGRNKSKAKSIGINEQSNKTDTNSSKLCENDTLDISERVFTDDDLEWLLTDDTNSKAVDATNLNGRQKRKSSIEVTHEDRIDESITSPMKSYKKNPIDCLICNATYADELDLKMHLEKVHFPRSSSDKTPATSIDIIDTSCTADDSDIVEIIWEKKSSNTASSDKHLELHSICKSENEATNGSCSVPSIEQQPIDNSDVGKLKVKWFAKITD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -