Pmec026888.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- -
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000012.1:7820366-7824497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.16 28 6.5 3.6 1 23 564 587 564 587 0.94 2 12 8.2e-05 0.014 16.9 3.1 1 23 593 616 593 616 0.96 3 12 0.61 1.1e+02 4.7 0.3 1 19 622 640 622 642 0.95 4 12 4.4e-05 0.0077 17.8 1.6 2 23 699 720 698 720 0.97 5 12 0.015 2.7 9.8 0.9 1 23 722 745 722 745 0.94 6 12 0.0002 0.034 15.7 0.8 1 23 751 774 751 774 0.97 7 12 2.3e-05 0.004 18.6 1.5 1 23 780 803 780 803 0.93 8 12 0.0014 0.24 13.0 0.6 2 23 810 832 809 832 0.95 9 12 0.00021 0.037 15.6 1.8 1 23 837 859 837 859 0.97 10 12 0.00066 0.11 14.1 0.2 1 23 865 886 865 886 0.95 11 12 2.1e-06 0.00037 21.9 0.3 1 23 892 914 892 914 0.98 12 12 0.0011 0.2 13.3 0.8 1 23 920 942 920 942 0.97
Sequence Information
- Coding Sequence
- ATGCATCCACGAATCAGACCACCACCTCAACTTATCGAAAAAGGACCAACGAATGGAAAGGATACCAAGACAAGGATTGAACCGATGAAAGTCAGACCACTACGTCAACCCCTCGAACACCGTCCAACGAGTGAGAAGGACGCCGAGCTAAGGATTGAATCGATAAAAGTTAGACCGCTTTCTCAACTCATCGAACAGCGTCCAAACGGCAAGGTTACCGAGGCAAGGATTGAACCGATAAGAGTTCGGCCGCTATCTCAACTCATCGAGCAGCGTCCGGCGAATGAGAGAGTCACCGAGCCAAGGATTGAACCGATAAAAGTTAAACCGCTTTATCAACTAATGGAACAGCCTCCGACGAATGTGGGGCTCAGAGAGCCAAGGATTATACTGACAAGGGTTAGATTACCACCTCAATATATCGAACAGGATCTTGTGAGTGCAGTTACTGAGCTAAGGATTAGACGAGTAAAAGCCAGGACACCACCTCAAACCATCCAACGGGATCTTGCGAGTGAGGTCACTGAATCAAGAATTGAACCGATGAAAGTTAGAGTGCTATCTCAACTCATCAAACAACGTCCAACGAGTGAAAGAGTCACCGAGCCAAGGATGGAACTGATAAAAGTCAGACCACCACAAAGGTTAATCGAACCGGATCTTGTGAGTGAAGTCACAGAGCCAAGAATTGATCCGATAATAGTAAGACTACCAGCTCAATCTATCGAACAGGGGTCGGTGAGCAAGAAGATCACTGAACCCAGGATTGAACCGATAACAATCAGACTACCACATCAATCTGTGGAACAGGATCTTGCAAATGAAGTCACAGAGCCAAGAATTGATCCGATAATAGTAAGACTACCAGCTCAATCTATCGAACAGAGGTCGGTGAGCAAGAAGATCATTGAACCCAGGATTGAACCGATAAAAGTCAGACTGCTACCTCAATCCATCGAACAGGGACCGACGAGCGAGAAGATTATGAAGCCGAAGATTGAACCAATAAAAGTCAAACTGCTACCTCAATCTGCGGAGCAGGGACTTGCGAGTGAAGTCACTGAGCAGAGGATTGAACCGATAAAAGTCAAACGGCTACTTCAATTTGTCGAACAGGGACCGACGATCGAGAAGACCACCGAGCCAAGAGTTGAACCGATCAAAGTCAGACTGCTACCTCAATCCATAGAACACGGACCTGCGAGTGAGATCACTGAGCCAAGGATTGAACCCATAAAAGTCAGACTGCTATCTCAATCTATCGAACAGGGGCCGACGACTGAAATGATCACCGAGCCCAGAATTGaacgaataaaaatcagaCTGCCCCCTCAATTCATCGAGCAGGTTCCGACGAATGAGAAGGTCGCCGCACCGAGGATTGAACCGATAAAAATCAGACTGCCCCCTCAATCCATGGAACAGGTTACAACATGTGAGAAGGTTACCGAACCAAGGATCAAACCGATAAAAATTAGACTGCTACGTCAACTTATCGAGAAAGGTACGACGAATGAGATGGTCACGGAACCAAATGTTGAAAATACTGGACTCGTGGAAGAACCTAAGGAACGCGTGAAAATACGTATACAATACAAGGATCGGTATAATTCCTGTGTGCAACCGTTTAGAATGATAAGGGATCTGCGCCAGCACTGCGTACAGAACCATGGTGATACCTCATGGTTGTTTAAATGTGAGTTTTGCGACTATAGAAGCAAATATAAGCATCTAGTGAAGTTACACCTGATTTTAAGACACGTGGGTAACTACATCTACACTTGCGACATATGCAAGAAACGCTTCAAGGACAATTACACAATAATGAAACATAGAAAGCAGATGCATAGCAAACAGTTCCGATTCGCCTGCACCATTTGTGAAGACGTCTACCAAACCCGGGGAGGACTAAGGAAACACAATCACCCGGCACTGGATCCCCTACGGTTCACAAATACTACGAGAAAATCTTGGAAAATCAGACTGCCACCTGGACCCACCAAGACGGAGAGACAGCCAAAGAGTCGAGTGAGGGCGAAGGCTATTAAGAGTGAAAGCGTCACCGAACCAAAGACTGAAACCAAGAGACTCGTAGAATGTGATCACTGTGGCAAGAAGttcaatttgaaaagaaagttGGAGGTGCACATCAAACTACACAAATACCCCTGCGATTCCTGCGAGCAGTCGTTCAAGGCGAAGAAGTATCTGAGCGAGCACTACGAGCAGAACCATGGTACCCTGCTTCTCTACCCTTGCGAGTTATGCGACTATAAAAGCAAAACAGCAACCACGCTGAAGCAACACATGATTCGACGCCACACGGGCAGTTATATCTACACCTGCAACCTTTGCGGGAAAAGCTTCAAGCTTCAAAACGACCTGAGGCAACACAACAATCAAATGCACAATAATCAACCGCCCCTCATATGCACTGTTTGCGGTCACGCCAGCAAAAGCTTGCCCGCTTTAAAGTCACACATGAGGTACAGACACTTCAGGCATGAACATGAGTGCAAGATATGCAAGCGTCGATTAAAGACTGAAGAGAGTCTCGAACGACACCTGCAATGGCacgaaaagaatgaaaaatttatttgtccCACGTGTGGGAAAAGCTTTGATAGTCGCGTCATCAACAACCATCTGCGTGTACACACTGAGGTGAAGCCTTTCTCTTGTCCTGTTTGTGGGAAGTCCTTCAGAAGACAAACTGCGAGAGAACAACATATCCTCATTCATACCGGGAAAAAACCTTACATCTGTGATATATGTGGACAGGGATTTACCCAGAAACCTGGGTTGATTTGTCACAGGAAGCGCCACCCTGGACCCCTGCCGCCACTCCCTGCTTTGTccgttaaaaatattgttgacAAATTCACCGAGGAATATGCTATGAAACAAAAGAGTGTTGAGGCTAATTGA
- Protein Sequence
- MHPRIRPPPQLIEKGPTNGKDTKTRIEPMKVRPLRQPLEHRPTSEKDAELRIESIKVRPLSQLIEQRPNGKVTEARIEPIRVRPLSQLIEQRPANERVTEPRIEPIKVKPLYQLMEQPPTNVGLREPRIILTRVRLPPQYIEQDLVSAVTELRIRRVKARTPPQTIQRDLASEVTESRIEPMKVRVLSQLIKQRPTSERVTEPRMELIKVRPPQRLIEPDLVSEVTEPRIDPIIVRLPAQSIEQGSVSKKITEPRIEPITIRLPHQSVEQDLANEVTEPRIDPIIVRLPAQSIEQRSVSKKIIEPRIEPIKVRLLPQSIEQGPTSEKIMKPKIEPIKVKLLPQSAEQGLASEVTEQRIEPIKVKRLLQFVEQGPTIEKTTEPRVEPIKVRLLPQSIEHGPASEITEPRIEPIKVRLLSQSIEQGPTTEMITEPRIERIKIRLPPQFIEQVPTNEKVAAPRIEPIKIRLPPQSMEQVTTCEKVTEPRIKPIKIRLLRQLIEKGTTNEMVTEPNVENTGLVEEPKERVKIRIQYKDRYNSCVQPFRMIRDLRQHCVQNHGDTSWLFKCEFCDYRSKYKHLVKLHLILRHVGNYIYTCDICKKRFKDNYTIMKHRKQMHSKQFRFACTICEDVYQTRGGLRKHNHPALDPLRFTNTTRKSWKIRLPPGPTKTERQPKSRVRAKAIKSESVTEPKTETKRLVECDHCGKKFNLKRKLEVHIKLHKYPCDSCEQSFKAKKYLSEHYEQNHGTLLLYPCELCDYKSKTATTLKQHMIRRHTGSYIYTCNLCGKSFKLQNDLRQHNNQMHNNQPPLICTVCGHASKSLPALKSHMRYRHFRHEHECKICKRRLKTEESLERHLQWHEKNEKFICPTCGKSFDSRVINNHLRVHTEVKPFSCPVCGKSFRRQTAREQHILIHTGKKPYICDICGQGFTQKPGLICHRKRHPGPLPPLPALSVKNIVDKFTEEYAMKQKSVEAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -