Basic Information

Insect: Perdita meconis
Gene Symbol: gtf3a
Assembly: GCA_030770465.2
Location: JASKOS020000017.1:249371-253743[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 8e-05 0.014 17.0 0.1 2 23 739 760 738 760 0.97

2 16 1.3 2.3e+02 3.7 0.8 3 23 794 814 793 814 0.97

3 16 0.00027 0.046 15.3 1.2 3 23 823 844 822 844 0.98

4 16 0.0039 0.68 11.7 2.1 1 23 851 874 851 874 0.95

5 16 9.5e-05 0.017 16.7 0.7 1 23 880 903 880 903 0.94

6 16 1.3 2.3e+02 3.7 2.5 2 23 911 931 911 931 0.94

7 16 1.4e-07 2.4e-05 25.6 2.1 2 23 937 958 936 958 0.97

8 16 2.3e-06 0.00039 21.8 0.2 1 23 964 986 964 986 0.99

9 16 0.00056 0.097 14.3 2.4 2 23 998 1020 997 1020 0.95

10 16 0.0079 1.4 10.7 2.5 1 23 1026 1049 1026 1049 0.96

11 16 0.031 5.4 8.8 3.0 2 23 1071 1093 1070 1093 0.95

12 16 0.0012 0.2 13.3 1.4 2 23 1100 1122 1099 1122 0.96

13 16 3.9e-05 0.0067 18.0 1.0 2 23 1130 1151 1129 1151 0.96

14 16 0.0012 0.21 13.2 2.3 1 23 1157 1180 1157 1180 0.96

15 16 0.33 57 5.6 3.2 2 23 1187 1208 1186 1208 0.96

16 16 0.0096 1.7 10.4 2.6 1 23 1214 1236 1214 1236 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	8e-05	0.014	17.0	0.1	2	23	739	760	738	760	0.97
2	16	1.3	2.3e+02	3.7	0.8	3	23	794	814	793	814	0.97
3	16	0.00027	0.046	15.3	1.2	3	23	823	844	822	844	0.98
4	16	0.0039	0.68	11.7	2.1	1	23	851	874	851	874	0.95
5	16	9.5e-05	0.017	16.7	0.7	1	23	880	903	880	903	0.94
6	16	1.3	2.3e+02	3.7	2.5	2	23	911	931	911	931	0.94
7	16	1.4e-07	2.4e-05	25.6	2.1	2	23	937	958	936	958	0.97
8	16	2.3e-06	0.00039	21.8	0.2	1	23	964	986	964	986	0.99
9	16	0.00056	0.097	14.3	2.4	2	23	998	1020	997	1020	0.95
10	16	0.0079	1.4	10.7	2.5	1	23	1026	1049	1026	1049	0.96
11	16	0.031	5.4	8.8	3.0	2	23	1071	1093	1070	1093	0.95
12	16	0.0012	0.2	13.3	1.4	2	23	1100	1122	1099	1122	0.96
13	16	3.9e-05	0.0067	18.0	1.0	2	23	1130	1151	1129	1151	0.96
14	16	0.0012	0.21	13.2	2.3	1	23	1157	1180	1157	1180	0.96
15	16	0.33	57	5.6	3.2	2	23	1187	1208	1186	1208	0.96
16	16	0.0096	1.7	10.4	2.6	1	23	1214	1236	1214	1236	0.98

Sequence Information

Coding Sequence: ATGCAGCACACAGAAGTAAACAACAGGGATCACAACTACAGCGAAGTAAAAGTAGATGGTCTTGAGTTTAGCAGAAATAATGCGTTCGACGGCGACGCGAAGATTACTTGCAAACCGACCAAGTCTTTAGTGACGTCGAACAAAGAAACGTTTGGTCAGATAAAAGACATAAACGAGTTGAAGAAGATAACGCCGCGTGTAAAATTGTTAGCTCACGATGCTAATACTCTGAGCGAGTTGACTAAAATCTCTTTGCACAACAAGATATCAATGCAAAGGAAACAAACGATATCCGAACGAGCCAAACAAGAATTGAAGAAGTACTGCAGGACGTGCGCAGGTTTAAAGCTTCCGTTGGTCGATATCTTTAGCGAGAAAGGAATGCAGATGAGATTGAGTCAGCAAATAAGACACTTGGAAGATATAAATCCGTACGATAGTTTGTCGACTCAAATGTGTATGGACTGTATTTGCGACTTGAAAATGAGTTACAAATTCTTCATGCAAATAAAGAAGGCGGAGGTTAAACTGAAATCCATTCACATTTCTTTAAGCGACGCAgctgtaaaaaatttagaagcgAACAAGACACAATCTGCGACGAGTACCGAAAACTCTGAGATACAAATAGAAAAGATTGTAGAATTCGATAGGATTAATCTGTCTACCAGTAAAGAATCTAAGGAAGAAACATCCGCGTCGTCTGCGTCTGAAATGTTTCCAGCGAAAGATAATCGAGTCCCTGCGAAAGAAGTAAAAGCAGATGGTGGTGCAGTTGTAGAGAAGGAATCGAACGCTGAGATCGAGATTTTCGAGGACGTCGCAACACAGCATAATGATCACAGCGATGACAATGAATCTATAGAAGAATTTGATCCAGACGATCCACCGTTTCATCCCGATAGCTCCGATATTGCGGAATCCGATGACGATGTGGAAATTCAAGCGACGAAAAGGCGACACGTCCAGCCGAAAGAAAATGACACGAAACCGTGTATACAACccgtttttatttatgaaaataactCTGTTCCAGGTAACGAAGCTAAAGATCTTAATCAAACGACTTACAAGTATGATACATCGTTGAATGCTTACATTAAAGTGGAGGATGTAGAAGACCGGAATTGCGCGAATGAATTGCAGAGTACAATTAAATCGGAAACCGTAAGTAATAGCGAAAGTACAAAGGAATTCGTGAAGCAGCCGAATATACTGAAACGACGACTCTTACTGCAACCTAAAAAAGAGCCTAACGAAGATGCAGACGATGCATCCAACGTTTCCGACAAAAATGGAGGTCCAAAGGACGCTAAAGTACAAAAATTAGACGTGAATTCTCTGACCGTTAACAGCAGTCAGGAAGACGGAATTATGTACGTCACTGTTAAAGGTTCGAAGCCGAACGAAATACTATTAGTTAAAGTGAAAAAGATGGACAAGCCGATGGAAAAGAAAGACGACAAAACCCCGGTGAAAAGGAACTTCGAGATTAAACCGATGGAAAAGATCTTAAAGCGATACGAAACGTTGGTAACCAAGGAGAAGGATTTATTTCCGGAGAGGACGAAAAAATCGGATATAAGAGAACAGATTATCGAGGAGCAAATAGaggaatataagaaaaagcGAGAGAAGGTGTTAGGCGGACACACGAGCATTTCGATTCCGCTGAAACTCGAGGAAAGCCAAACGCGTTACGTCAAACGTATCGAGATTCACGATGGTCAAAGACCATCTGCGAACGTCGAAAGTACAACGGTTATAAATTTAGAGTTCGATAaggataataataatagcgaCGCGAATACCAGTAAAGTGGAAAATAGTAGCCCTGAAAGCGACTCGGGAAAAGAAAAGTCGACCGGTGAAAAAGCGTATGTAAATACCGAGGAATATTTGTCGCGTTTGGCGAAGCTGAAGTTGAAGTGGGAAGaagcgaagaagaagaaagaatctTTGCAGAAGGAATTGGACGAGTCTTATACAGAAGGGAATATCGAGAAGCTGGCGAGGATTTTAGGCGAGAAGGAGAAGAATCTgcaagattttcaagattaCTTGAAACAACGTAAAATCGTGATCACGAGGCTCAAGGACGAGGACATTATTTCGCTTTACGAAGACAGGAACAACGCGGTGCTGAAGAACAGTTTGCCGGACCTGATAGACGAGAGCCAACCAGCGGATTACATACCGgaggaaaattatttggaatGCGATTATTGCCCGGAAACGTTCGCGTCGAAAGACGTGCTGGAGGAACATTTGAAAATGCACGATTACAAAATCATGCATTTCTGCGAGGACTGCATGGAAGAGTTTCCCACGAACAAAGCAAAACGGAGTCACAATATGGCTTGTATAAAGAAATTGCTGTGTAAATACTGCGACATTATACTGGATTCAAAAGGTAAGAAACGCCAGCATGAGCAGAAGCATTGCGACACAATGTACGGGCAACTGTGCGACGTGTGCGGCGAGAAGTTCAAACACCAAGGAACACTGGATCAGCACGTGAAGACGCAGCACATGAACTGGGAGAAGATCTTCCAGTGTCCAAAATGTCCGAAGAAGTTCGCGTTCAAGCAGAAACTTAGCTTCCACTTGAAGTCGGTTCACACGACGCTCAGAGCTTACCTGTGCGAGGATTGCGGCGCGGATTTCAAAAATCCTGCCAGCCTCAGACACCACAGAATACGCAAGCACCAACCGGTAGGCAACAAAAGGGAGTGTCCCGTCTGTCACAAACTGGTGCCATTTTATAGTCTCTCGAAGCACATGCACACTCACAAAGCGTACACCATACAGTGTCCGCATTGCGACAAGATGTTCAAGAACAGCTCGACTCTGAAACAGCACGTGAGGATCCACGAGGATCAGCGGCAGTACCGTTGCGACACTTGCGGCGTCGGTTTCAACAGACGCGACGGTCTGCGGTTGCACATGCGAGTGCACGAGAAGACGGACAGTCGAGGGTTGAAGGAGTGCTCGTGTCAGGTATGTGGCGAGAAATTCCCAAATCATTCGACGCTTGTTATCCACAGGAACAGAGTCCACAAGGACGGCAGGCAGTACACGTGCCACATATGCAACCGATCGATGATCTCGACCAGATCGTTGGAATGGCACATGTCTCATATACACAACGAATCGCTTCCGGGGATCGTGAAGGAGGACGTGGACGGAACGCTAGACAAGAAACGAGTTTCCTGTTACCATTGCAGCAAGACGTTCAAGACGGAGATGATACTAAGAACGCATATCAAGAACACGCACATGGAGAAGGATCCCATGAAGTGTTTGGACTGCGAGCTGACATTCACCTCGGAAGTCCGTCTGCGGCATCACATGATGGTGACGCACAACAGACTTGAAGGCACCTTGCCATGTCCGCATTGCCCGAAGAGATTCGTCAATCAACTCAGGCTGAAGACGCACATGATTTCCCATTCGGAGGAGAGACCGTACACCTGCGAGATCTGCGGGTTCAACTTGAAGACGAAGATCCAGCTGATCAAGCATCACCAGAACAGGCACAGCGACGAGAGGCCGTTGCAATGTAGGTATTGTCCTTGGAGGTGCAAACAGGTCAGCGCGCTCGTGTGCCACGAGAGAACGCACACGAACGAGCGACCGTACTCGTGCAGCGTGTGCAGGCAGCGTTTCAAATACTTGGGAGACAAGAACAAACACGAGAGACGGCACGAGAGCTTGGGAGGATCTGGATTTAAGAGGATCGTGCCTGGACGGAATATTAAACCCAAGGTCCAGGACGATTCTTCGTGTTCCGACCAGGAGCAAGAAGGTTTGGCGAACGCGGAGACTCAGATTGCTGACGGCGAGTACGAAGAGCAGGCGGATCAGCAATACGAAGAGGAGCAGATTGTGAAGTTCGAGGAGGAGGAGATAGTGAAGTTCGAGGAGCAAGAGATAACGGAAGAATATGAACAAGTATATGAAcaaGAGTACGAAGAGACGTCTAGGGAAGCTTCGGACGCGGCGGAAGTGATAATGAATATGGAAGACACTACCGTGTACACGGAAGAAGTGACCGCGGATAATATCGAGTCTGCGGAGATAATGGCGGACGAGATGATGACGAGCGAAATATTACAGTCCGGTGCCGTGGTTCATTTGCAACAGGAGGACGATTCGGGGAAGATACAAGTGATACCAGTGATGTTGTCATTGCCCGATCTCTCCGACGCGAACGCGGAGGTCAATTTAGCTACGGCGTccattatgtataataattga
Protein Sequence: MQHTEVNNRDHNYSEVKVDGLEFSRNNAFDGDAKITCKPTKSLVTSNKETFGQIKDINELKKITPRVKLLAHDANTLSELTKISLHNKISMQRKQTISERAKQELKKYCRTCAGLKLPLVDIFSEKGMQMRLSQQIRHLEDINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHISLSDAAVKNLEANKTQSATSTENSEIQIEKIVEFDRINLSTSKESKEETSASSASEMFPAKDNRVPAKEVKADGGAVVEKESNAEIEIFEDVATQHNDHSDDNESIEEFDPDDPPFHPDSSDIAESDDDVEIQATKRRHVQPKENDTKPCIQPVFIYENNSVPGNEAKDLNQTTYKYDTSLNAYIKVEDVEDRNCANELQSTIKSETVSNSESTKEFVKQPNILKRRLLLQPKKEPNEDADDASNVSDKNGGPKDAKVQKLDVNSLTVNSSQEDGIMYVTVKGSKPNEILLVKVKKMDKPMEKKDDKTPVKRNFEIKPMEKILKRYETLVTKEKDLFPERTKKSDIREQIIEEQIEEYKKKREKVLGGHTSISIPLKLEESQTRYVKRIEIHDGQRPSANVESTTVINLEFDKDNNNSDANTSKVENSSPESDSGKEKSTGEKAYVNTEEYLSRLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLARILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNSLPDLIDESQPADYIPEENYLECDYCPETFASKDVLEEHLKMHDYKIMHFCEDCMEEFPTNKAKRSHNMACIKKLLCKYCDIILDSKGKKRQHEQKHCDTMYGQLCDVCGEKFKHQGTLDQHVKTQHMNWEKIFQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGIVKEDVDGTLDKKRVSCYHCSKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKPKVQDDSSCSDQEQEGLANAETQIADGEYEEQADQQYEEEQIVKFEEEEIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNIESAEIMADEMMTSEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANAEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: -
80% Identity: -