Basic Information

Insect: Perdita meconis
Gene Symbol: -
Assembly: GCA_030770465.2
Location: JASKOS020000001.1:21517805-21521593[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.017 2.9 9.6 0.2 3 21 8 27 6 28 0.85

2 14 4 6.9e+02 2.2 0.0 2 20 34 52 33 54 0.91

3 14 0.92 1.6e+02 4.2 0.4 1 12 236 247 236 256 0.89

4 14 0.013 2.3 10.0 3.1 1 23 366 388 366 388 0.97

5 14 0.00022 0.038 15.6 0.2 2 23 392 413 392 413 0.97

6 14 0.00061 0.11 14.2 4.9 1 23 424 446 424 446 0.98

7 14 0.034 5.9 8.7 0.1 1 23 465 486 465 486 0.76

8 14 0.00065 0.11 14.1 0.1 2 23 492 513 491 513 0.95

9 14 4.7e-05 0.0081 17.7 4.8 1 23 541 563 541 563 0.99

10 14 2e-06 0.00035 22.0 3.7 1 23 569 591 569 591 0.96

11 14 0.0011 0.19 13.4 3.9 3 23 599 619 597 619 0.97

12 14 1.4e-06 0.00025 22.5 0.8 1 23 625 647 625 647 0.98

13 14 9e-05 0.016 16.8 0.2 1 23 651 673 651 673 0.99

14 14 0.00039 0.067 14.8 0.2 1 23 681 703 681 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.017	2.9	9.6	0.2	3	21	8	27	6	28	0.85
2	14	4	6.9e+02	2.2	0.0	2	20	34	52	33	54	0.91
3	14	0.92	1.6e+02	4.2	0.4	1	12	236	247	236	256	0.89
4	14	0.013	2.3	10.0	3.1	1	23	366	388	366	388	0.97
5	14	0.00022	0.038	15.6	0.2	2	23	392	413	392	413	0.97
6	14	0.00061	0.11	14.2	4.9	1	23	424	446	424	446	0.98
7	14	0.034	5.9	8.7	0.1	1	23	465	486	465	486	0.76
8	14	0.00065	0.11	14.1	0.1	2	23	492	513	491	513	0.95
9	14	4.7e-05	0.0081	17.7	4.8	1	23	541	563	541	563	0.99
10	14	2e-06	0.00035	22.0	3.7	1	23	569	591	569	591	0.96
11	14	0.0011	0.19	13.4	3.9	3	23	599	619	597	619	0.97
12	14	1.4e-06	0.00025	22.5	0.8	1	23	625	647	625	647	0.98
13	14	9e-05	0.016	16.8	0.2	1	23	651	673	651	673	0.99
14	14	0.00039	0.067	14.8	0.2	1	23	681	703	681	703	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTGAATCTCGTTTGCCCGATGTGTTGTGGCGAAACTTTTAATAATCCGCAGTCgttaaaatatcatttattaagCATGACGGACAACCTATACTGTCCTAGTTGTTCGCAGCGATCTGATTCAGTTGCTGCGCTCATTCAGCATTTGGATCGTTGTGGACAGAGCGGCGAATCGGACGTATCGCCAGAACCAAAACACAAACCCGACCAGAAAGAAGCTCAGCAGGAGCCTGTAGGAGATCCAGAAGTTTTAATGgaTGCTAATGTTGAAGGGATAGATCAAAGTTTTCTAGCAACTGTGAACGATAGTGGAATCATGATAGTTGGTGGACCCCAAACGATACAAGTCGATGAAAATGGAGAGATTAAAGTTGTGGAGAAAATGGAAACGGAAGAAACACGATTGGAGGAAAATTCTTTGGAATTTAAGATAACAGAAAAAGTTCCTAGCATTGCAACCAAAGTAGAAGAAAAGTCTTTAACTCAGGATGAATTAGTAACAATATCGACATCCGAAACAGATGATAAAAACGACAATAAAAATGTGATTACTATTTTACCCGATGGATCGGAACTCCTCGACGAAGACACTGGCGCTCTGATAAATATGGATCACATAAACGATGTTGGCGAGCTAGACGAAGACGGATTGTTACACGTTAAACAAGAACTTTGCGAGATAGAACCGGAAGCAGTTTACAGTTGTACTAGTTGCGATATGAGCTTTAATTCTGTTGTGGAACACATAAAACAATTTCACGATGGGCAGGAAGTACTTCTTGAAATAGCCGATCAGTTGGATGATTTACCTGCAGTATCAACAGCTAATGCCTTGCCGTCAGAATCTGCAAGTGCCACTAATACACGACAGAGACAAAGTATGAATACTATACGTACAGAAGAATGTGTTGACAGCGAAGGAAGATTATATACAAGGAAAGTAGTACAAATAGAGAGATTTTGGGATCGAACACCGGCGCAAACGTCGATTCAGTCAACAAAGGCACCAATGATTGAAAAGTTTTTCTCTAACGTTGAAGGAGTAAAAGTACGCGAAAAAAGATTAGCAGCAGCGCCAATGAGAATGTACAGATGTAATCAGTGCCTTCAGCAATTCTCTAAATTAGGAAATTTCCGGGTACACGCGTGTCTTCATGGTAACAATCGCTGCGACAGCTGCGACCAAACATTCGCAACGCCAAAAGCGTTGCAGCTACATGCAAAAGTGCACGATGGCGAACCCGATCCAAACCAAAAAACTTTCGTTTGCGAGACTTGTGGAACAGAATTTTGTTCGCACAAAAGCCTGCGCTTGCATTCTCGAATGCATGCGCCAGTGAGAGCGAGACACGTCGATGCGCCCGAAGGAACGCCTAGTGCAACGTTCACGTGTCCCGAGTGtgGCAAAACATTGGCGGAATCGTACAAAGAAGCGCACATGGCGTTGCACTCCGGCGACTCTGTCACGTGCACAGTTTGCAACAGAAAATTTGATTCCGCTGATAGTTTAGCGATGCACGCTGCGGTGCACACAGAACTCGGTCAGTCGCAATCGCCGACGCCGCCTATTACGGATACCACGACCACCGAACCCACGGAAAATCAGAAGCCTTACCAATGCCAGCACTGTGGCCGTAGATTCACAAGACCTCACGAGAAAGTGAAACACGAGCGCATTCATACCGGGGAAAAACCACACGCGTGCGAAGTCTGCGGTAAAACGTTTCGCGTCTCCTACTGTCTGACTTTGCACATGAGAACTCATACGGGAGTCAGGCCTTACGGATGCCAACATTGTGGCAAAAGATTCAAAGCTTCCTCCGTGTACAATCACCATTTACTCACGCATGGAGAGGAACGGGCTTACACGTGCCCCTATTGTCCTAAAACGTTCAAGACGCGGGTTCAACTGGCGGGGCACAAAAACAGTCACACGAAACCGTTTCGGTGCACCGAGTGTTCTCGACCGTTCGCTTCTCTGTACGCGGCACGCGCCCACATACAGACTCACAAAAAGGTCAATAACTTGAAATTCAGCTGTTACATTTGCGGTGCGTCGTATGGCAGAGCGTTCGCGTTGAAGGATCACTTGAAACAACATGGCCAAGATGTACTCGCGCCGCCGGAACCAGCACGGGAGGAGGAAGTTCAAGAAGGCGAAGACTTTTTGCTTGCGGAAGAAGAAGTCGAAGACGAGGAGTTGGTCAGCCAATCGCCATTGCCCGTTGCGCAATCGTCGGATGCTGAGGACACTGAATGA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPSCSQRSDSVAALIQHLDRCGQSGESDVSPEPKHKPDQKEAQQEPVGDPEVLMDANVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGEIKVVEKMETEETRLEENSLEFKITEKVPSIATKVEEKSLTQDELVTISTSETDDKNDNKNVITILPDGSELLDEDTGALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDLPAVSTANALPSESASATNTRQRQSMNTIRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSIQSTKAPMIEKFFSNVEGVKVREKRLAAAPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHDGEPDPNQKTFVCETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELGQSQSPTPPITDTTTTEPTENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKVNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEVQEGEDFLLAEEEVEDEELVSQSPLPVAQSSDAEDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -