Pmec025378.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perdita meconis
Gene Symbol
-
Assembly
GCA_030770465.2
Location
JASKOS020000011.1:5728593-5731902[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.043 7.5 8.4 1.1 2 21 323 342 322 343 0.92
2 16 0.00038 0.067 14.8 6.0 2 23 380 401 379 401 0.97
3 16 0.0023 0.4 12.4 4.4 2 23 442 464 441 464 0.96
4 16 0.002 0.35 12.5 0.2 1 23 470 492 470 492 0.91
5 16 5.3e-06 0.00091 20.7 2.6 1 23 498 520 498 520 0.96
6 16 2.3e-05 0.0039 18.7 1.8 1 23 529 551 529 551 0.98
7 16 0.00059 0.1 14.2 4.6 1 20 557 576 557 579 0.94
8 16 2.3e-06 0.0004 21.8 0.3 1 23 584 606 584 606 0.97
9 16 0.014 2.4 9.9 2.1 1 23 613 635 613 635 0.97
10 16 0.2 35 6.2 2.5 2 23 655 676 654 676 0.91
11 16 0.00051 0.089 14.4 1.9 2 23 684 706 683 706 0.96
12 16 0.089 16 7.4 1.2 3 23 714 734 713 734 0.97
13 16 5.6e-06 0.00097 20.6 0.9 1 23 740 762 740 762 0.98
14 16 9.6e-07 0.00017 23.0 1.9 1 23 768 790 768 790 0.98
15 16 2e-06 0.00034 22.0 1.5 1 23 796 818 796 818 0.98
16 16 0.00054 0.093 14.4 0.5 2 23 824 845 823 845 0.96

Sequence Information

Coding Sequence
atgagTATAGTCTGTGCTgcgaaaaattgtaaatattcttcggaaaatgaagatttaacgcatgtcatttttattaactttccGAATGACGATACTTCGAAAATATGGGCGCATCATTGCGGCAGAACTGATCTATTAACCaaaacaaatgaagaattacatttaaattattatatatgttCCCATCACATAGAGGACCGTTATTATATAAGTAAAATGGATCCAATTATAATAAACCAGCATGCGGTTCCTACGTTATTCGACTCGGATCTTATTGCAAAAAAAGATACAACAGATATGTTTGATAGGAACGAGCAAGCAGAAGTAACAGACAGCGTTGTATTGACTTATTGTGACGTTGACGCCGAGATAGATCATTACGGTGGCATTAGTATTAGATTTCCAAATTTATGCAGAATATGCGGAGAACCGTCTTTGGACGCCATAGAAATATTTGCAGAGAAAGGAATGGAATTgaaagtaaatgaaaaaatacatttacatcTTCCAATAAACATTGAGATGGAAGACTTGATGCCACAGAAATTGTGTATAAACTGTTATAATAGATTAGAAATTGCTCATTCGCTCGTTGTAACTTCGTTGCGAACAGATATGAGACTGAGAAGGTTTCTGAGTATTAACGAAGAACTGAACTATGACAGTAAATACAATGAGTTAGCGAAGAAATGCTCTGCGGAAATAGCCGAAGAAATGTGTTCCAGTGAAATTACTCAAAGTACGTCTATGGAATTGCCTTCCAGCAAAGTTGAAGGGACTATAATGAATCAAATACAGAAAGACGATACGGACAAAAATACGTTTGAAAGCAATGTAAGAAAAGAAATGCAATCTGAATTGAATAGTTTCATTGAATCGTACGGAGAAGAAGACAACGACAATCCATCGAATGAAACTGCGACAAATGATTCGAATAAGGATATAGTAAATGATTACAATGAAATTGTATGCTTTCATTGCAAGGATTCTTTTAGAACGCAGGAGATGtttcaaaatcataaaatgttGTGCGACGAAGAGGAAATAATagtagaaaaggaaaaggaaagcGATAACAATGTAAGCAGCAAAGAATCCGGTACTATAGAATTAATCAACTTTGAGCTTGCTACAAAGACCTGCGACATTTGCCAGAAATGTTTTACGAGCGAGAAACACTTAACTGAGCATAAACTCTCACATTGTAAATTTTCTGAAGGAAGTTGCCAAATTCCTGATAAATTAAGTGCGATCGAAAACGAGCGCAATGTACATAAAAATACTCCAAATACTGACATGATAGTATTTatgaaaactaataaaaaatgtggTCACTGCGATACAATTTATTCTACTAAAAGGCAATTGTTAAGTCATATTGCCAAGTGTCACGGAGGTCAATCATTATTCAAATGTATTGCATGTAACAGAAGTTTCGAAAAGTGGTCTAGCTTAGACGTACACATAGCTACTCACAGAGTAGACAATCCTTACTTATGCGATTTGTGCGGCAAAAGCTTTAAGCATTCGAATAACTTGCGGGGTCATAAGAGAATTCACTTAGACGACGCGAAAAAGAATCGATACGTCTGTGAAATTTGCAGGAAAGCATTCAGATCTAGGTTTCATTTAGGAGAACATATGAACCAGCACAATGGGAACAAGCCTTATTCTTGCGAAAAATGTGGGAAGACTTTTTACAAGAGAATACAATTAAGACAGCACAGATTATGTCACGGCGTGAATAAACATGTTTGTCCAGTATGTGGAGCCGCGTTCAATCGCAAAGGGAACATGAATGCGCACCTGAAAAGGCACAACAACAAAGACGGGACGTACGCGTGTAGCGTTTGCGCGTACAGATGTAAGTCTATGAGCGAGCTGAAACTGCACAGAAAAGAGCATACGGAAGAAGATATAGCAGAgagtataaagaaaaagtgcATAGATAAGACCATATGgcattgtaaatattgtagtCGAATATTTCCATCGCGAGCGACTCTGGTATGCCACGAACGCGCGCATAAAGAGGAAAAAATAAGCGTCGAGTGCAATATTTGTGGAAAGGAATTAGCAAGTAAACATTCTTTGCTGCATCATAAAAAATCTGTGCATTCTACGGAGAGGCCGGAAATGTGCCACTTCTGCGGCGATTCGTTCGTTTCTAAAGAGACGCGACTTATACACGAGAGGGTACACACTGGGGAGCGTCCGTACGTTTGCGAAATCTGTAAAATGGAATACAAGTACTCGAGCAATCTCTATCAGcacatgaaaattcattctgGAATCAAACCgcataaatgtaaatattgtgGCAAGGATTTCGCCCGAAAAGGAACGTTAAATGTGCATGAAAGAATTCACACAGGGGAGAAACCTTACCCTTGTGAAACCTGCGGTAGAACGTTTTCGCAAAAGAACGATATGTTGAAGCATACCAAAACGCATAAAGCGAAATCGTTGCAATGCGACCAATgtgatgaaatttttacgaaaaagaaagatattgTGAAGCATATTACTTCACACGAACAAATTAATCCTGTAGCGCAGTTCGTGGAGATACAACCGTACAATGTAAATTTATCGTGTTctaagttttaa
Protein Sequence
MSIVCAAKNCKYSSENEDLTHVIFINFPNDDTSKIWAHHCGRTDLLTKTNEELHLNYYICSHHIEDRYYISKMDPIIINQHAVPTLFDSDLIAKKDTTDMFDRNEQAEVTDSVVLTYCDVDAEIDHYGGISIRFPNLCRICGEPSLDAIEIFAEKGMELKVNEKIHLHLPINIEMEDLMPQKLCINCYNRLEIAHSLVVTSLRTDMRLRRFLSINEELNYDSKYNELAKKCSAEIAEEMCSSEITQSTSMELPSSKVEGTIMNQIQKDDTDKNTFESNVRKEMQSELNSFIESYGEEDNDNPSNETATNDSNKDIVNDYNEIVCFHCKDSFRTQEMFQNHKMLCDEEEIIVEKEKESDNNVSSKESGTIELINFELATKTCDICQKCFTSEKHLTEHKLSHCKFSEGSCQIPDKLSAIENERNVHKNTPNTDMIVFMKTNKKCGHCDTIYSTKRQLLSHIAKCHGGQSLFKCIACNRSFEKWSSLDVHIATHRVDNPYLCDLCGKSFKHSNNLRGHKRIHLDDAKKNRYVCEICRKAFRSRFHLGEHMNQHNGNKPYSCEKCGKTFYKRIQLRQHRLCHGVNKHVCPVCGAAFNRKGNMNAHLKRHNNKDGTYACSVCAYRCKSMSELKLHRKEHTEEDIAESIKKKCIDKTIWHCKYCSRIFPSRATLVCHERAHKEEKISVECNICGKELASKHSLLHHKKSVHSTERPEMCHFCGDSFVSKETRLIHERVHTGERPYVCEICKMEYKYSSNLYQHMKIHSGIKPHKCKYCGKDFARKGTLNVHERIHTGEKPYPCETCGRTFSQKNDMLKHTKTHKAKSLQCDQCDEIFTKKKDIVKHITSHEQINPVAQFVEIQPYNVNLSCSKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01169222;
90% Identity
-
80% Identity
-