Pmec026891.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- -
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000012.1:7831391-7835525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.7e-06 0.0017 19.8 5.1 2 23 71 92 70 92 0.97 2 19 0.36 63 5.5 2.4 1 23 94 117 94 117 0.91 3 19 0.00026 0.045 15.3 1.3 1 23 122 145 122 145 0.97 4 19 0.00083 0.14 13.8 3.8 1 23 151 174 151 174 0.96 5 19 0.0026 0.45 12.2 2.5 3 23 182 203 180 203 0.94 6 19 0.00014 0.025 16.2 0.6 1 23 208 230 208 230 0.96 7 19 5.9e-06 0.001 20.5 0.8 3 23 238 258 236 258 0.97 8 19 0.00044 0.076 14.6 0.1 1 23 264 286 264 286 0.97 9 19 0.00079 0.14 13.8 0.4 1 23 292 314 292 314 0.97 10 19 4.1 7.1e+02 2.1 6.2 1 23 371 394 371 394 0.92 11 19 1.1e-05 0.0019 19.7 0.3 1 23 400 422 400 422 0.95 12 19 0.0002 0.034 15.7 1.5 1 23 428 450 428 450 0.97 13 19 0.0038 0.66 11.7 1.6 1 23 456 478 456 478 0.98 14 19 6.5e-05 0.011 17.2 4.3 1 23 484 507 484 507 0.98 15 19 0.025 4.3 9.1 1.5 1 23 523 546 523 546 0.95 16 19 0.009 1.6 10.5 0.2 1 23 554 576 554 576 0.95 17 19 1.6e-06 0.00028 22.3 1.4 2 23 583 604 582 604 0.97 18 19 0.0001 0.018 16.6 1.3 3 23 612 632 610 632 0.97 19 19 0.0027 0.47 12.1 1.7 1 23 638 660 638 660 0.98
Sequence Information
- Coding Sequence
- ATGGTAATCTGTTTTAGTGTCCCACCAGTGGATCCTCTGGGCGACGTGCACACCGAGGTAGAATCGTGGAAGATCAAACTGCCATTAAATCCTGCCCCGAAGAAGAGAAAGCCGCCCAAAAGCCAAAAAGAAGACACGAGTCAAAAAGAAAACGCGAGTCAAAAAGATCAAGAGACTTCTAAGATAAAGTACGAAATCAAACCAACCGTGGAGTGCGGTCACTGCCAGAAGAAGTTCTACCGGAAATCGTCTCTGATCTCGCACATGAGGCACCACAGACATACCTGCGAATCCTGCACCGAGACGTTCAAGCTGAGGAAGGACATGGTGCTGCACCACGAAGAGGTCCACGGTCCCCTGATTTATACGTGCAACACCTGCGATTACAAGAGCAGTAACAGGTGGACATTAAAGGACCACATCATTCGACGGCACACGGGCACCTACTTGTACACATGTGAAATATGCCGAAAGCAGTTCAAAATCAAGAACGATCTGAAGCAGCACACGAACCACATGCACAGCAATCGGCCGCCGGTGATCTGCACTGTCTGCGGACAGTCGTGCAAGAGTCTTCCGTGCTTACGAGCGCACATGACGTACAGGCATTTCAAGCCCGAGTACCAGTGCAAGGTGTGCAAACGTCGGCTGAAGACCGAGGAGGGTTTGAAGCAGCACATGGTCTGGCACAAGAACCAGGAGAAGGTAATCTGTCCCACGTGCGGGAAACTGTTTAACCAGCACAGGGATCTGAATCTACATATGAGGATCCACGAGGGCATCAAACCGTTCGCCTGCCCGGTCTGTCTCAAAACTTTTGTCAGGAGGACCGCACAGGAGCAGCACATACTGATACACATAGGCAAAAGACCCTACGTATGCGATGTCTGTGGACAGGCCTTCGCCCAGAAGCCTGGGCTCATTTGTCATAGAAAGAGGCATCCTGGACCTCTGCCGCCACTGCCTGTGATCTCAGTGAGGAAGCTCGTGAATGAGTTTACTGAGTCAATGAACAACTCCGGGAATAAGAATAACGAGTCCGTTCAGGTGTCCAAGAAGGACGATGGGAAAGAGGAAGTGAAGTCACGAAGATCAACTTCGCGAACGATCCACGAGTGCATCAAGTGTAAGGCTTCCTTCTGCCACACGAGGAAGTTAGTGGAGCACCTGAAGAACCTACACGGCATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAGACGTTCCGTAGTCCGATGAACATAGCCCGCCACAAGCTGGACCACACGAACTCGAAGAGGTTCGCCTGCGAGCTGTGCGAGTATCGCACTAACCAGAAGTCGAACCTGGACAACCACCGTCGACGGCATAAGAAGGACTACTCCTTCAAGTGCGAGAAGTGCCAGAAGGGTTTCCTGTTCAAGACCGAGTACCTCGAGCACATGAACGTGCACACCAAGAAGGAGCTGTATCGATGCGAGCACTGCGGCAAGTCCTACCTCTACAAGAAGAACCTGATGAGCCACCTGAGGCGGCAACACGTGGACACGTTGCCCGCGTCGATGAGAAACAACGTGAAGCGCAAACACGTCTGCAAAATCTGTCTAGAGGGATTCTCGGAGAAGCTGCTTTGGGAGAGGCACATGCTGCATCAGCACGGGCTGCGCGACAAAGAGAAATACCTATGCGAAATCTGCGGCGCCACGTTGTCCTCGACTAACAGACTCACGATGCACAGGCGAGCCCACATGAATGAAAAAACTCTCAAGTGCGACATCTGCGACAAGAGGTTCGTCGAGAAGGAGCACCTCAACGTTCACCGGCGGATACACACGGGCGAAAAGCCGTACGGTTGCACGCAGTGCGGGAGGAGGTTCACTCAAAGGACCTCCTTGATCCTGCACAACAGGTATCATACCGGGGAAAGACCTTATCAATGCGCCGTTTGCGGCAAGGGATTCGTATGTGGAAGCTTCCTCAAGAAGCATCGcaagatccacgagaaaacCTCGCAGCTCGAGACCTGA
- Protein Sequence
- MVICFSVPPVDPLGDVHTEVESWKIKLPLNPAPKKRKPPKSQKEDTSQKENASQKDQETSKIKYEIKPTVECGHCQKKFYRKSSLISHMRHHRHTCESCTETFKLRKDMVLHHEEVHGPLIYTCNTCDYKSSNRWTLKDHIIRRHTGTYLYTCEICRKQFKIKNDLKQHTNHMHSNRPPVICTVCGQSCKSLPCLRAHMTYRHFKPEYQCKVCKRRLKTEEGLKQHMVWHKNQEKVICPTCGKLFNQHRDLNLHMRIHEGIKPFACPVCLKTFVRRTAQEQHILIHIGKRPYVCDVCGQAFAQKPGLICHRKRHPGPLPPLPVISVRKLVNEFTESMNNSGNKNNESVQVSKKDDGKEEVKSRRSTSRTIHECIKCKASFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLDHTNSKRFACELCEYRTNQKSNLDNHRRRHKKDYSFKCEKCQKGFLFKTEYLEHMNVHTKKELYRCEHCGKSYLYKKNLMSHLRRQHVDTLPASMRNNVKRKHVCKICLEGFSEKLLWERHMLHQHGLRDKEKYLCEICGATLSSTNRLTMHRRAHMNEKTLKCDICDKRFVEKEHLNVHRRIHTGEKPYGCTQCGRRFTQRTSLILHNRYHTGERPYQCAVCGKGFVCGSFLKKHRKIHEKTSQLET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -