Pmec026884.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- ZFY
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000012.1:7806164-7810572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5e-05 0.0086 17.6 1.8 1 23 40 62 40 62 0.97 2 22 0.0013 0.23 13.1 4.0 3 23 83 103 81 103 0.93 3 22 7.4e-06 0.0013 20.2 2.6 1 23 112 134 112 134 0.96 4 22 0.00011 0.019 16.5 0.8 1 23 156 178 156 178 0.96 5 22 0.017 3 9.6 1.2 1 23 194 216 194 216 0.94 6 22 3.8e-06 0.00065 21.1 0.6 2 23 240 261 239 261 0.95 7 22 2.1e-05 0.0036 18.8 2.1 2 23 281 302 280 302 0.96 8 22 7.4e-05 0.013 17.1 2.1 1 23 318 341 318 341 0.97 9 22 7.3e-06 0.0013 20.2 3.1 1 23 347 370 347 370 0.98 10 22 8.2e-05 0.014 16.9 1.9 3 23 377 398 375 398 0.96 11 22 1.1e-06 0.00019 22.8 2.6 2 23 410 431 409 431 0.96 12 22 0.00013 0.022 16.3 1.2 1 23 437 459 437 459 0.97 13 22 0.0012 0.21 13.3 1.9 1 23 465 488 465 488 0.95 14 22 0.0012 0.2 13.3 0.3 2 23 724 746 723 746 0.91 15 22 0.81 1.4e+02 4.4 0.5 1 23 758 781 758 781 0.94 16 22 0.054 9.4 8.1 3.5 1 23 794 817 794 817 0.93 17 22 0.0002 0.034 15.7 5.8 1 23 823 845 823 846 0.95 18 22 0.0085 1.5 10.6 0.4 3 23 853 874 851 874 0.94 19 22 0.00097 0.17 13.6 1.5 1 23 879 902 879 902 0.98 20 22 4.3e-07 7.5e-05 24.1 0.4 2 23 909 930 908 930 0.96 21 22 3.6e-06 0.00063 21.2 1.3 1 23 936 958 936 958 0.97 22 22 4.7e-05 0.0082 17.7 1.0 1 23 964 986 964 986 0.98
Sequence Information
- Coding Sequence
- ATGTTCTATCACAACAGGAACGACATTGCGCGAGACCCATTGGAACCAGAAGACTTTGCAAATATTAGTATAAAAGAAGAGGAATTGATTTCGTCCGAGGAAGAAGTATGGGGAAAATATAGCTGTGAGTTCTGTTCTAGACCGTTCTCAAAACTGTACAATCTAAATCGACACAGATTGTTACATGAGAATCCAGACTACGTAGCCCAGGAATACGATTGGGCCATACGTAAACGAAATCTTGCCTGTAAATTTTGCCACAAACATTTTCCGAAACTGTACAATTTGAAGCGGCACGAACTTGCGCACACGGATGAGGGGCGCAAGCGGAATTTCACGTGCGACATTTGCAATAAACCGTTCAAGAAATTGTACAATTTGAAGCGGCATAAAACTCTGCACGAGTTGCAAAATATCGATCCCTTGGCGCAGAACTCCGACGAGTCGAGCAAGAAGAGACGAACATTCATTTGTGACGTTTGCTTCAAAGGCTTCCAGAGTCAGGAGAATCTAACGCGACACAAACTCCTGCACGAGGAGGATACGAGCGAGATGGTCGAGGCGTATAGGAAAGGGGAATACGCTTGCGACATTTGTCAGAAACGATTCCTGACGCTGCACAGCTTGGAGGATCACAAGGGTTCGCACCGAAACGAAGACGTTGACCCTTTGGCTCCAGCTCCCGAGGAGACGTCTACGCGGCAACGACGAAATCTCGTGTGCAGCATTTGTCAAAGACAGTTCTCGAGGCCGTACAACCTGAGACGGCACGAAATGTTGCACGAGCTGCGACAGAAGGAACGCCTCAGCCAGGACCTCAACGAGTGGGACAAGCGCCTCACCTGCGACGTCTGCAACAAACGATTCCAGACACGGTACAACCTGCTGCGGCATAAGATGTCGCACGAGAGCAAGGAGGATCAATTGGAGGACTATAGATATCAGCGAGAATACATCTGCGACGTATGCAACGTGGTCTGCAGTCGCAGAGAACATTTGAAGGCCCATATTCTGCGCAAGCACAGCAAGCAAAATAATTTCACCTGCGAGCACTGCGACAAACAGTACAAGTTTAAGGGCGATCTGCAGACCCACATCAGGGTGTACCACCGCGAGACGCTCGTGATCTGCGACATCTGCGGCAAATCCTGTCGCAGTCTTCATGGTCTGTTCGCGCATCAGAAGTCCGACCATCCCAAGGGTAGGCACGAGAAGAGGGAAAGATGCGTGTGCGAGACGTGCGGCAAGATCTTCAACAAGAGATCGACGTTGAGAAGACACATTAGGATCCACACGGGCGTCAAACCCTACAACTGTTCCGTCTGCAGCAGACCTTTCAAGACTCACAGCGCCTTGAGTCAACACTTGATCCTGCACACCGGGGAGAAGGTCTACGCTTGCGACATCTGTAAGAAGTCCTTCGCTCAGAAGGCTGGCCTGATATGCCACAGGAAGAAGACACATTCCGGGACGTTGCCCCCTTTGCCTGTCACACATATTGATCATATCTTGAAGGAGTACGAACTCGAAAGCCTCAATTCGCGCGGTATCTTTATCTACGACAAGGAGTCGgtgattatgaaaaaatggcAGATCCTGGAGTTCGATGGGAAGCCCTACTACGCTTTTGTACCTGAAGGCGACGCTCCGTTGGCCGACGAAGACATACCGGAGCAGTTGGACGAAATCGACGACGAGAAGCAGGAGCACGTGAAGGTGGAGTGTTTGTACGACGATGAGAACCTCCAGTTCGACTCATCGTACGAGAAACTGTACGAGGAGGAGGAGCACCTTCTGAACGGGAGCAACGAGCAGAAGGAGGACGGTGAGGACGAGGACGTGAAGCCGATTCTTCTTAACGGCACGATCGACGGTGAGACTGACAAGGAGATCGGGGACCTGTACCAGGTCAAGGTGCAGGGGAGCATGGTGACAATAGAGAAGCTCACGCCGAGTGAAATAGACGCCAAAGATATGGAGTATCAGCAGATAGGGGAGGAGCAGGAGATGTACAACGAGGAGCACTTGGAGCAACTGGATCAAGACGACCAAGGCGATCAGGTGGAGCAGGTGGAGTACCTGGAGGAAGCGCTGCTGGAGTCCATCAACAACCACGTCTTGCCCGCGAAGACACGACGGAAAATCTCAAGGAGCGCTAGTGGAGCGTTAAAGTGTAAAGTCTGCTCGGAGATGTTCAGCTCGGCGATATCATTCAGGAAGCACGTGGCGTGGACGCACAAGAAGAAAGTCTGCATACAAGAAGACGGTGCGTACATCTGCGCCGTGTGCGACTACAGAACGCTGAAGAAAAGCCTCTTCGCTTCGCACTTGGAGAGGAAACACGAGACCTGGTCGAGGAAGCGGCCCAACAACATGCTGTTCCCTTGCGCCGCGTGCGGCTTCGTCTGCCGGTCGAAGCACTCGTTGCAATCGCACTTTATTAGAAAGCACACCGACCGGTACGAGCACCAGTGCAAGTTTTGCCCGAAGAAGTTCAAGGTGAAGGGCGACCTGACGAACCACGTGCGGTTTCACCACAAGGAGAAGCCGATCAACTGCGACGTTTGCGGCAAGCTCTGCCAGAACAGCGGCTCCCTCTACGTCCACCAGAAGTGGGCTCACTACAAGCCCAAGTACGAGTGCCACATATGCAAGAGGCGCATGGTCACGCAGGAAAACCTTGACCAGCATTTGTTAACGCAACACGAGAAGAGAGAGAAGATCGTGTGCGCCGAGTGCGGCAAGACCTTCACGAAAAAGGACTCGTTCAAGAGGCACATGGCTGTCCACACCGGGTGCAAGCCACATTCCTGTCTCATCTGCAACAAACCCTTCGCCAGGAGATCCCAGTTGCGCCAACACTTGCTCATACACACCGGCAAGAGGCCTTTTGTCTGCGACATTTGCGGCAAAGCGTTCACGCAGAAACCTGGCCTCATCTGTCACAGGAAGACGCATCCTGGCCCTCACCCTCCTCTGCCTGTGATGCCCATCGCCGACATCGTCAAGGAGTTCACCGAAGGATACGTTCAGGAGATAAACGCGCGCGACAACGAGGAGAGAATCGAGGACGAAGCGTAG
- Protein Sequence
- MFYHNRNDIARDPLEPEDFANISIKEEELISSEEEVWGKYSCEFCSRPFSKLYNLNRHRLLHENPDYVAQEYDWAIRKRNLACKFCHKHFPKLYNLKRHELAHTDEGRKRNFTCDICNKPFKKLYNLKRHKTLHELQNIDPLAQNSDESSKKRRTFICDVCFKGFQSQENLTRHKLLHEEDTSEMVEAYRKGEYACDICQKRFLTLHSLEDHKGSHRNEDVDPLAPAPEETSTRQRRNLVCSICQRQFSRPYNLRRHEMLHELRQKERLSQDLNEWDKRLTCDVCNKRFQTRYNLLRHKMSHESKEDQLEDYRYQREYICDVCNVVCSRREHLKAHILRKHSKQNNFTCEHCDKQYKFKGDLQTHIRVYHRETLVICDICGKSCRSLHGLFAHQKSDHPKGRHEKRERCVCETCGKIFNKRSTLRRHIRIHTGVKPYNCSVCSRPFKTHSALSQHLILHTGEKVYACDICKKSFAQKAGLICHRKKTHSGTLPPLPVTHIDHILKEYELESLNSRGIFIYDKESVIMKKWQILEFDGKPYYAFVPEGDAPLADEDIPEQLDEIDDEKQEHVKVECLYDDENLQFDSSYEKLYEEEEHLLNGSNEQKEDGEDEDVKPILLNGTIDGETDKEIGDLYQVKVQGSMVTIEKLTPSEIDAKDMEYQQIGEEQEMYNEEHLEQLDQDDQGDQVEQVEYLEEALLESINNHVLPAKTRRKISRSASGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFASHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARDNEERIEDEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -